myRT

myRT report for GCA_002891025.1_ASM289102v1

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Seq: NBSL01000002.1 Enterococcus avium strain FDAARGOS_182 scf7180000000006_trim_quiver_pilon, whole genome shotgun sequence (3127954 bp)
Overview 1 RT 1: 17795-25034 bp 2 RT 2: 672138-677684 bp 3 RT 3: 683593-690775 bp 4 RT 4: 700940-704067 bp 5 RT 5: 1034914-1044806 bp 6 RT 6: 1618543-1623951 bp 7 RT 7: 2739254-2746441 bp 8 RT 8: 2751599-2756708 bp Neighborhood of RT #1 [17795, 25034] 7tmA_5-HT1A_invertebrates 7tmA_5-HT1A_invertebrates AAA_10 RVT-GII HNHc Neighborhood of RT #2 [672138, 677704] RelB_DinJ FtsK_SpoIIIE RVT-GII HNHc FtsK Dcm Neighborhood of RT #3 [683593, 690775] RVT-GII HNHc AAA_10 Neighborhood of RT #4 [700940, 704075] Arm-DNA-bind_4 Phage_int_SAM_3 INT_ICEBs1_C_like YitT_membrane RVT-GII KOG4768 InsE Neighborhood of RT #5 [1034914, 1044835] peptidase-T LPG_synthase_TM RVT-GII RVT-GII GIIM RVT-GII GIIM AL_MDR chaperone_ClpB Neighborhood of RT #6 [1618543, 1623951] LysR toxin_Txe_YoeB RVT-GII DUF2922 Neighborhood of RT #7 [2739254, 2746441] AAA_10 RVT-GII HNHc Neighborhood of RT #8 [2751599, 2756716] Zeta_toxin FtsK RVT-GII HNHc FtsK_SpoIIIE RelB_DinJ Feature: gene Location: 17795-19972 bp Feature: domain Description: 7tmA_5-HT1A_invertebrates Location: 18098-18356 bp Feature: domain Description: 7tmA_5-HT1 A_invertebrates Location: 1 8098-1 8356 bp Feature: domain Description: 7tmA_5-HT1A_invertebrates Location: 19307-19754 bp Feature: domain Description: 7tmA_5-HT1 A_invertebrates Location: 1 9307-1 9754 bp Feature: gene Location: 19975-21252 bp Feature: domain Description: AAA_10 Location: 20137-21220 bp Feature: domain Description: AAA_1 0 Location: 201 37-21 220 bp Feature: gene Location: 21292-23094 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21589-22288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 589-22288 bp Feature: domain Description: HNHc Note: nucleases Location: 22843-22981 bp Feature: domain Description: HNHc Note: nucleases Location: 22843-22981 bp Feature: gene Location: 23620-23769 bp Feature: gene Location: 23772-25034 bp Feature: gene Location: 672138-672482 bp Feature: domain Description: RelB_DinJ Location: 672348-672474 bp Feature: domain Description: RelB_DinJ Location: 672348-672474 bp Feature: gene Location: 672551-673567 bp Feature: domain Description: FtsK_SpoIIIE Location: 673208-673448 bp Feature: domain Description: FtsK_SpoIIIE Location: 673208-673448 bp Feature: gene Location: 674161-676035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 674527-675223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 674527-675223 bp Feature: domain Description: HNHc Note: nucleases Location: 675763-675922 bp Feature: domain Description: HNHc Note: nucleases Location: 675763-675922 bp Feature: gene Location: 676137-676517 bp Feature: domain Description: FtsK Location: 676152-676389 bp Feature: domain Description: FtsK Location: 6761 52-676389 bp Feature: gene Location: 676562-677704 bp Feature: domain Description: Dcm Location: 676565-677684 bp Feature: domain Description: Dcm Location: 676565-677684 bp Feature: gene Location: 683593-684852 bp Feature: gene Location: 684855-685004 bp Feature: gene Location: 685530-687236 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 685827-686526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 685827-686526 bp Feature: domain Description: HNHc Note: nucleases Location: 687081-687219 bp Feature: domain Description: HNHc Note: nucleases Location: 687081 -68721 9 bp Feature: gene Location: 687475-688647 bp Feature: domain Description: AAA_10 Location: 687529-688612 bp Feature: domain Description: AAA_1 0 Location: 687529-68861 2 bp Feature: gene Location: 688652-690775 bp Feature: gene Location: 700940-702082 bp Feature: domain Description: Arm-DNA-bind_4 Location: 700985-701114 bp Feature: domain Description: Arm-DNA-bind_4 Location: 700985-701 1 1 4 bp Feature: domain Description: Phage_int_SAM_3 Location: 701141-701309 bp Feature: domain Description: Phage_int_SAM_3 Location: 701 1 41 -701 309 bp Feature: domain Description: INT_ICEBs1_C_like Location: 701498-702026 bp Feature: domain Description: INT_ICEBs1 _C_like Location: 701 498-702026 bp Feature: gene Location: 702561-702689 bp Feature: domain Description: YitT_membrane Location: 702591-702684 bp Feature: domain Description: YitT_membrane Location: 702591 -702684 bp Feature: gene Location: 702750-703412 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 702834-703275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 702834-703275 bp Feature: gene Location: 703327-703599 bp Feature: domain Description: KOG4768 Location: 703351-703552 bp Feature: domain Description: KOG4768 Location: 703351 -703552 bp Feature: gene Location: 703785-704075 bp Feature: domain Description: InsE Location: 703788-704067 bp Feature: domain Description: InsE Location: 703788-704067 bp Feature: gene Location: 1034914-1036143 bp Feature: domain Description: peptidase-T Location: 1034920-1036138 bp Feature: domain Description: peptidase-T Location: 1 034920-1 0361 38 bp Feature: gene Location: 1036246-1037280 bp Feature: domain Description: LPG_synthase_TM Location: 1036285-1037203 bp Feature: domain Description: LPG_synthase_TM Location: 1 036285-1 037203 bp Feature: gene Location: 1037736-1038539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1038057-1038531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 038057-1 038531 bp Feature: gene Location: 1038664-1038795 bp Feature: gene Location: 1039071-1040315 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1039275-1039932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 039275-1 039932 bp Feature: domain Description: GIIM Note: maturase Location: 1040013-1040229 bp Feature: domain Description: GIIM Note: maturase Location: 1 04001 3-1 040229 bp Feature: gene Location: 1040434-1040988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1040446-1040536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 040446-1 040536 bp Feature: domain Description: GIIM Note: maturase Location: 1040593-1040809 bp Feature: domain Description: GIIM Note: maturase Location: 1 040593-1 040809 bp Feature: gene Location: 1041064-1042074 bp Feature: domain Description: AL_MDR Location: 1041076-1042066 bp Feature: domain Description: AL_MDR Location: 1 041 076-1 042066 bp Feature: gene Location: 1042226-1044835 bp Feature: domain Description: chaperone_ClpB Location: 1042250-1044806 bp Feature: domain Description: chaperone_ClpB Location: 1 042250-1 044806 bp Feature: gene Location: 1618543-1619382 bp Feature: domain Description: LysR Location: 1618546-1619251 bp Feature: domain Description: LysR Location: 1 61 8546-1 61 9251 bp Feature: gene Location: 1619983-1620144 bp Feature: domain Description: toxin_Txe_YoeB Location: 1620007-1620142 bp Feature: domain Description: toxin_Txe_YoeB Location: 1 620007-1 6201 42 bp Feature: gene Location: 1621190-1622962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1621451-1622153 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 621 451 -1 6221 53 bp Feature: gene Location: 1623277-1623489 bp Feature: domain Description: DUF2922 Location: 1623298-1623478 bp Feature: domain Description: DUF2922 Location: 1 623298-1 623478 bp Feature: gene Location: 1623565-1623951 bp Feature: gene Location: 2739254-2741377 bp Feature: gene Location: 2741382-2742662 bp Feature: domain Description: AAA_10 Location: 2741544-2742627 bp Feature: domain Description: AAA_1 0 Location: 2741 544-2742627 bp Feature: gene Location: 2742702-2744504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2742999-2743698 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2742999-2743698 bp Feature: domain Description: HNHc Note: nucleases Location: 2744253-2744391 bp Feature: domain Description: HNHc Note: nucleases Location: 2744253-2744391 bp Feature: gene Location: 2745030-2745179 bp Feature: gene Location: 2745182-2746441 bp Feature: gene Location: 2751599-2752273 bp Feature: domain Description: Zeta_toxin Location: 2751698-2752181 bp Feature: domain Description: Zeta_toxin Location: 2751 698-27521 81 bp Feature: gene Location: 2752368-2752712 bp Feature: domain Description: FtsK Location: 2752380-2752620 bp Feature: domain Description: FtsK Location: 2752380-2752620 bp Feature: gene Location: 2752814-2754688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2753180-2753876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27531 80-2753876 bp Feature: domain Description: HNHc Note: nucleases Location: 2754416-2754575 bp Feature: domain Description: HNHc Note: nucleases Location: 275441 6-2754575 bp Feature: gene Location: 2755282-2756319 bp Feature: domain Description: FtsK_SpoIIIE Location: 2755954-2756200 bp Feature: domain Description: FtsK_SpoIIIE Location: 2755954-2756200 bp Feature: gene Location: 2756381-2756716 bp Feature: domain Description: RelB_DinJ Location: 2756585-2756708 bp Feature: domain Description: RelB_DinJ Location: 2756585-2756708 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 7tmA_5-HT1A_invertebrates (cd15331), AAA_10 (pfam12846), RVT-GII, HNHc (smart00507), RelB_DinJ (TIGR02384), FtsK_SpoIIIE (pfam01580), FtsK (COG1674), Dcm (COG0270), Arm-DNA-bind_4 (pfam14657), Phage_int_SAM_3 (pfam14659)
INT_ICEBs1_C_like (cd01189), YitT_membrane (pfam02588), KOG4768 (KOG4768, Mitochondrial mRNA maturase ), InsE (COG2963), peptidase-T (TIGR01882), LPG_synthase_TM (pfam03706), GIIM (pfam08388), AL_MDR (cd08252), chaperone_ClpB (TIGR03346), LysR (COG0583)
toxin_Txe_YoeB (TIGR02116), DUF2922 (pfam11148), Zeta_toxin (pfam06414)

Seq: NBSL01000003.1 Enterococcus avium strain FDAARGOS_182 scf7180000000008_quiver_pilon, whole genome shotgun sequence (1392040 bp)
Overview 1 RT 1: 1343301-1348863 bp Neighborhood of RT #1 [1343301, 1348880] HTH_XRE RVT-GII GIIM Arylsulfotran_N Arylsulfotrans LolD Feature: gene Location: 1343301-1343882 bp Feature: gene Location: 1344144-1344458 bp Feature: domain Description: HTH_XRE Location: 1344168-1344330 bp Feature: domain Description: HTH_XRE Location: 1344168-1344330 bp Feature: gene Location: 1344694-1346082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1345015-1345630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1345015-1345630 bp Feature: domain Description: GIIM Note: maturase Location: 1345687-1345903 bp Feature: domain Description: GIIM Note: maturase Location: 1345687-1345903 bp Feature: gene Location: 1346558-1348195 bp Feature: domain Description: Arylsulfotran_N Location: 1346774-1347026 bp Feature: domain Description: Arylsulfotran_N Location: 1346774-134702 6 bp Feature: domain Description: Arylsulfotrans Location: 1347077-1348139 bp Feature: domain Description: Arylsulfotrans Location: 1347077-1348139 bp Feature: gene Location: 1348221-1348880 bp Feature: domain Description: LolD Location: 1348266-1348863 bp Feature: domain Description: LolD Location: 13482 66-1348863 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-GII, GIIM (pfam08388), Arylsulfotran_N (pfam17425), Arylsulfotrans (pfam05935), LolD (COG1136)