myRT

myRT report for GCA_002891055.1_ASM289105v1

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Seq: NBSM01000001.1 Enterococcus avium strain FDAARGOS_180 unitig_0_quiver_pilon, whole genome shotgun sequence (3262354 bp)
Overview 1 RT 1: 138824-143129 bp 2 RT 2: 234706-242734 bp 3 RT 3: 1121039-1124845 bp 4 RT 4: 2216798-2222019 bp 5 RT 5: 2494439-2498650 bp 6 RT 6: 2511861-2525202 bp 7 RT 7: 2595923-2601420 bp 8 RT 8: 3019701-3024321 bp Neighborhood of RT #1 [138824, 143137] RVT-GII GIIM cysteine_hydrolases MATE_MepA_like MATE_MepA_like Neighborhood of RT #2 [234706, 242763] peptidase-T LPG_synthase_TM RVT-GII GIIM AL_MDR chaperone_ClpB Neighborhood of RT #3 [1121039, 1124845] DUF2798 DUF2798 RVT-GII GIIM Neighborhood of RT #4 [2216798, 2222019] SsuD RVT-UG17 SLATT_5 Neighborhood of RT #5 [2494439, 2499600] RAYT RVT-GII GIIM RAYT Mga Neighborhood of RT #6 [2511861, 2525273] LPXTG_anchor RAYT RVT-GII GIIM vWFA CollagenBindB SpaA CollagenBindB SpaA SpaA GramPos_pilinD1 GramPos_pilinD1 RrgB_K2N_iso_D2 GramPos_pilinD1 RVT-GII GIIM RAYT Neighborhood of RT #7 [2595923, 2601464] Acyl_transf_3 PRK09379 RVT-GII GIIM Sortase_D_1 Neighborhood of RT #8 [3019701, 3024326] SrmB RVT-GII GIIM Peptidase_M29 Feature: gene Location: 138824-138952 bp Feature: gene Location: 139420-139614 bp Feature: gene Location: 140563-141951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 140884-141499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 40884-1 41 499 bp Feature: domain Description: GIIM Note: maturase Location: 141556-141772 bp Feature: domain Description: GIIM Note: maturase Location: 1 41 556-1 41 772 bp Feature: gene Location: 142107-142625 bp Feature: domain Description: cysteine_hydrolases Location: 142122-142524 bp Feature: domain Description: cysteine_hydrolases Location: 1 421 22-1 42524 bp Feature: gene Location: 142787-143137 bp Feature: domain Description: MATE_MepA_like Location: 142820-142991 bp Feature: domain Description: MATE_MepA_like Location: 1 42820-1 42991 bp Feature: domain Description: MATE_MepA_like Location: 142997-143129 bp Feature: domain Description: MATE_MepA_like Location: 1 42997-1 431 29 bp Feature: gene Location: 234706-235935 bp Feature: domain Description: peptidase-T Location: 234712-235930 bp Feature: domain Description: peptidase-T Location: 23471 2-235930 bp Feature: gene Location: 236038-237072 bp Feature: domain Description: LPG_synthase_TM Location: 236077-236995 bp Feature: domain Description: LPG_synthase_TM Location: 236077-236995 bp Feature: gene Location: 237528-238916 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 237849-238464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 237849-238464 bp Feature: domain Description: GIIM Note: maturase Location: 238521-238737 bp Feature: domain Description: GIIM Note: maturase Location: 238521 -238737 bp Feature: gene Location: 238992-240002 bp Feature: domain Description: AL_MDR Location: 239004-239994 bp Feature: domain Description: AL_MDR Location: 239004-239994 bp Feature: gene Location: 240154-242763 bp Feature: domain Description: chaperone_ClpB Location: 240178-242734 bp Feature: domain Description: chaperone_ClpB Location: 2401 78-242734 bp Feature: gene Location: 1121039-1121167 bp Feature: gene Location: 1121167-1121646 bp Feature: domain Description: DUF2798 Location: 1121203-1121365 bp Feature: domain Description: DUF2798 Location: 1 1 21 203-1 1 21 365 bp Feature: domain Description: DUF2798 Location: 1121440-1121620 bp Feature: domain Description: DUF2798 Location: 1 1 21 440-1 1 21 620 bp Feature: gene Location: 1122133-1123521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1122454-1123069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 22454-1 1 23069 bp Feature: domain Description: GIIM Note: maturase Location: 1123126-1123342 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 231 26-1 1 23342 bp Feature: gene Location: 1123571-1123975 bp Feature: gene Location: 1124030-1124845 bp Feature: gene Location: 2216798-2217823 bp Feature: domain Description: SsuD Location: 2216867-2217788 bp Feature: domain Description: SsuD Location: 221 6867-221 7788 bp Feature: gene Location: 2218015-2218347 bp Feature: gene Location: 2219162-2220571 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 2219387-2219972 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 221 9387-221 9972 bp Feature: gene Location: 2220587-2221210 bp Feature: domain Description: SLATT_5 Location: 2220632-2221193 bp Feature: domain Description: SLATT_5 Location: 2220632-2221 1 93 bp Feature: gene Location: 2221354-2222019 bp Feature: gene Location: 2494439-2494693 bp Feature: gene Location: 2494883-2495371 bp Feature: domain Description: RAYT Location: 2494901-2495285 bp Feature: domain Description: RAYT Location: 2494901 -2495285 bp Feature: gene Location: 2495922-2497310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2496243-2496858 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2496243-2496858 bp Feature: domain Description: GIIM Note: maturase Location: 2496915-2497131 bp Feature: domain Description: GIIM Note: maturase Location: 249691 5-24971 31 bp Feature: gene Location: 2497387-2497857 bp Feature: domain Description: RAYT Location: 2497408-2497792 bp Feature: domain Description: RAYT Location: 2497408-2497792 bp Feature: gene Location: 2498158-2499600 bp Feature: domain Description: Mga Location: 2498395-2498650 bp Feature: domain Description: Mga Location: 2498395-2498650 bp Feature: gene Location: 2511861-2512022 bp Feature: domain Description: LPXTG_anchor Location: 2511921-2512005 bp Feature: domain Description: LPXTG_anchor Location: 251 1 921 -251 2005 bp Feature: gene Location: 2512210-2512683 bp Feature: domain Description: RAYT Location: 2512228-2512612 bp Feature: domain Description: RAYT Location: 251 2228-251 261 2 bp Feature: gene Location: 2513250-2514638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2513571-2514186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 251 3571 -251 41 86 bp Feature: domain Description: GIIM Note: maturase Location: 2514243-2514459 bp Feature: domain Description: GIIM Note: maturase Location: 251 4243-251 4459 bp Feature: gene Location: 2515050-2518946 bp Feature: domain Description: vWFA Location: 2516022-2516697 bp Feature: domain Description: vWFA Location: 251 6022-251 6697 bp Feature: domain Description: CollagenBindB Location: 2517237-2517537 bp Feature: domain Description: CollagenBindB Location: 251 7237-251 7537 bp Feature: domain Description: SpaA Location: 2517615-2517765 bp Feature: domain Description: SpaA Location: 251 761 5-251 7765 bp Feature: domain Description: CollagenBindB Location: 2517870-2518173 bp Feature: domain Description: CollagenBindB Location: 251 7870-251 81 73 bp Feature: domain Description: SpaA Location: 2518254-2518398 bp Feature: domain Description: SpaA Location: 251 8254-251 8398 bp Feature: domain Description: SpaA Location: 2518488-2518710 bp Feature: domain Description: SpaA Location: 251 8488-251 871 0 bp Feature: gene Location: 2518946-2521300 bp Feature: domain Description: GramPos_pilinD1 Location: 2519063-2519393 bp Feature: domain Description: GramPos_pilinD1 Location: 251 9063-251 9393 bp Feature: domain Description: GramPos_pilinD1 Location: 2519816-2520275 bp Feature: domain Description: GramPos_pilinD1 Location: 251 981 6-2520275 bp Feature: domain Description: RrgB_K2N_iso_D2 Location: 2520308-2520782 bp Feature: domain Description: RrgB_K2N_iso_D2 Location: 2520308-2520782 bp Feature: domain Description: GramPos_pilinD1 Location: 2520815-2521175 bp Feature: domain Description: GramPos_pilinD1 Location: 252081 5-2521 1 75 bp Feature: gene Location: 2521791-2523179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2522112-2522727 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25221 1 2-2522727 bp Feature: domain Description: GIIM Note: maturase Location: 2522784-2523000 bp Feature: domain Description: GIIM Note: maturase Location: 2522784-2523000 bp Feature: gene Location: 2523364-2523534 bp Feature: gene Location: 2524800-2525273 bp Feature: domain Description: RAYT Location: 2524818-2525202 bp Feature: domain Description: RAYT Location: 252481 8-2525202 bp Feature: gene Location: 2595923-2596900 bp Feature: domain Description: Acyl_transf_3 Location: 2595950-2596844 bp Feature: domain Description: Acyl_transf_3 Location: 2595950-2596844 bp Feature: gene Location: 2596940-2597893 bp Feature: domain Description: PRK09379 Location: 2596994-2597888 bp Feature: domain Description: PRK09379 Location: 2596994-2597888 bp Feature: gene Location: 2598702-2600090 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2599023-2599638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2599023-2599638 bp Feature: domain Description: GIIM Note: maturase Location: 2599695-2599911 bp Feature: domain Description: GIIM Note: maturase Location: 2599695-259991 1 bp Feature: gene Location: 2600195-2600788 bp Feature: gene Location: 2600814-2601464 bp Feature: domain Description: Sortase_D_1 Location: 2601048-2601420 bp Feature: domain Description: Sortase_D_1 Location: 2601 048-2601 420 bp Feature: gene Location: 3019701-3020879 bp Feature: domain Description: SrmB Location: 3019725-3020856 bp Feature: domain Description: SrmB Location: 301 9725-3020856 bp Feature: gene Location: 3020992-3021198 bp Feature: gene Location: 3021621-3022619 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3021942-3022557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3021 942-3022557 bp Feature: gene Location: 3022697-3023008 bp Feature: domain Description: GIIM Note: maturase Location: 3022703-3022832 bp Feature: domain Description: GIIM Note: maturase Location: 3022703-3022832 bp Feature: gene Location: 3023088-3024326 bp Feature: domain Description: Peptidase_M29 Location: 3023109-3024321 bp Feature: domain Description: Peptidase_M29 Location: 30231 09-3024321 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), cysteine_hydrolases (cl00220), MATE_MepA_like (cd13143), peptidase-T (TIGR01882), LPG_synthase_TM (pfam03706), AL_MDR (cd08252), chaperone_ClpB (TIGR03346), DUF2798 (pfam11391), SsuD (COG2141)
RVT-UG17, SLATT_5 (pfam18160), RAYT (COG1943), Mga (pfam05043), LPXTG_anchor (TIGR01167), vWFA (cl00057), CollagenBindB (cl15753), SpaA (pfam17802), GramPos_pilinD1 (pfam16555), RrgB_K2N_iso_D2 (TIGR04226)
Acyl_transf_3 (pfam01757), PRK09379 (LytR family transcriptional regulator), Sortase_D_1 (cd05828), SrmB (COG0513), Peptidase_M29 (pfam02073)

Seq: NBSM01000004.1 Enterococcus avium strain FDAARGOS_180 unitig_1_quiver_pilon, whole genome shotgun sequence (1280158 bp)
Overview 1 RT 1: 17901-22535 bp 2 RT 2: 26683-32262 bp 3 RT 3: 383524-388807 bp 4 RT 4: 1034440-1039592 bp Neighborhood of RT #1 [17901, 22564] PRK11907 Gram_pos_anchor Endonuclea_NS_2 RVT-GII HNHc Endonuclea_NS_2 Neighborhood of RT #2 [26683, 32453] Tryptophan_synthase_alpha RAYT RVT-GII GIIM DUF5131 PRK00701 Neighborhood of RT #3 [383524, 388917] DEDD_Tnp_IS110 Transposase_20 RVT-GII GIIM RVT-GII YorC VOC_like Neighborhood of RT #4 [1034440, 1039615] TIGR00276 RAYT RVT-GII group_II_RT_mat CelB Feature: gene Location: 17901-18920 bp Feature: domain Description: PRK11907 Location: 17928-18174 bp Feature: domain Description: PRK11907 Location: 1792 8-18174 bp Feature: domain Description: Gram_pos_anchor Location: 18804-18918 bp Feature: domain Description: Gram_pos_anchor Location: 18804-18918 bp Feature: gene Location: 19005-19499 bp Feature: domain Description: Endonuclea_NS_2 Location: 19008-19203 bp Feature: domain Description: Endonuclea_NS_2 Location: 19008-192 03 bp Feature: gene Location: 19616-21391 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19877-20579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19877-2 0579 bp Feature: domain Description: HNHc Note: nucleases Location: 21140-21278 bp Feature: domain Description: HNHc Note: nucleases Location: 2 1140-2 12 78 bp Feature: gene Location: 21730-21924 bp Feature: gene Location: 22106-22564 bp Feature: domain Description: Endonuclea_NS_2 Location: 22337-22535 bp Feature: domain Description: Endonuclea_NS_2 Location: 2 2 337-2 2 535 bp Feature: gene Location: 26683-27375 bp Feature: domain Description: Tryptophan_synthase_alpha Location: 26695-27355 bp Feature: domain Description: Tryptophan_synthase_alpha Location: 2 6695-2 7355 bp Feature: gene Location: 27552-28025 bp Feature: domain Description: RAYT Location: 27570-27954 bp Feature: domain Description: RAYT Location: 2 7570-2 7954 bp Feature: gene Location: 28592-29980 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28913-29528 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 8913-2 952 8 bp Feature: domain Description: GIIM Note: maturase Location: 29585-29801 bp Feature: domain Description: GIIM Note: maturase Location: 2 9585-2 9801 bp Feature: gene Location: 30130-30846 bp Feature: domain Description: DUF5131 Location: 30142-30766 bp Feature: domain Description: DUF5131 Location: 30142 -30766 bp Feature: gene Location: 30882-32453 bp Feature: domain Description: PRK00701 Location: 30915-32262 bp Feature: domain Description: PRK00701 Location: 30915-32 2 62 bp Feature: gene Location: 383524-384597 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 383530-383836 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 383530-383836 bp Feature: domain Description: Transposase_20 Location: 384202-384460 bp Feature: domain Description: Transposase_2 0 Location: 3842 02 -384460 bp Feature: gene Location: 384872-385729 bp Feature: gene Location: 385796-386350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 385808-385898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 385808-385898 bp Feature: domain Description: GIIM Note: maturase Location: 385955-386171 bp Feature: domain Description: GIIM Note: maturase Location: 385955-386171 bp Feature: gene Location: 386422-387183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 386743-387175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 386743-387175 bp Feature: gene Location: 387670-388200 bp Feature: domain Description: YorC Location: 387682-388186 bp Feature: domain Description: YorC Location: 387682 -388186 bp Feature: gene Location: 388444-388917 bp Feature: domain Description: VOC_like Location: 388447-388807 bp Feature: domain Description: VOC_like Location: 388447-388807 bp Feature: gene Location: 1034440-1035582 bp Feature: domain Description: TIGR00276 Location: 1034464-1035469 bp Feature: domain Description: TIGR002 76 Location: 1034464-1035469 bp Feature: gene Location: 1035761-1036234 bp Feature: domain Description: RAYT Location: 1035779-1036163 bp Feature: domain Description: RAYT Location: 1035779-1036163 bp Feature: gene Location: 1036801-1037703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1037122-1037695 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103712 2 -1037695 bp Feature: gene Location: 1037712-1038188 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1037721-1037985 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 103772 1-1037985 bp Feature: gene Location: 1038314-1039615 bp Feature: domain Description: CelB Location: 1038329-1039592 bp Feature: domain Description: CelB Location: 103832 9-1039592 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11907 (bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase), Gram_pos_anchor (pfam00746), Endonuclea_NS_2 (pfam13930), RVT-GII, HNHc (smart00507), Tryptophan_synthase_alpha (cd04724), RAYT (COG1943), GIIM (pfam08388), DUF5131 (pfam07505), PRK00701 (divalent metal cation transporter MntH)
DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371), YorC (COG4502), VOC_like (cd16355), TIGR00276 (epoxyqueuosine reductase), group_II_RT_mat (TIGR04416), CelB (COG1455)