myRT

myRT report for GCA_002891075.1_ASM289107v1

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Seq: NBSN01000003.1 Paraburkholderia fungorum strain FDAARGOS_245 unitig_0_quiver_trim_quiver_pilon, whole genome shotgun sequence (4659582 bp)
Overview 1 RT 1: 395407-401528 bp 2 RT 2: 3433197-3441965 bp 3 RT 3: 3996999-4007026 bp Neighborhood of RT #1 [395407, 401584] ilvH PRK05479 RVT_N RVT-GII GIIM HNHc PRK05305 PssA Neighborhood of RT #2 [3433197, 3442000] argJ PRK12904 RVT_N RVT-GII GIIM HNHc DciA LpxC Neighborhood of RT #3 [3996999, 4007040] lambda_lys_like VgrG DUF2345 RVT-Retrons GlxA GyrI-like 2A0305 Feature: gene Location: 395407-395898 bp Feature: domain Description: ilvH Location: 395410-395887 bp Feature: domain Description: ilvH Location: 39541 0-395887 bp Feature: gene Location: 396046-397062 bp Feature: domain Description: PRK05479 Location: 396049-397030 bp Feature: domain Description: PRK05479 Location: 396049-397030 bp Feature: gene Location: 398333-399934 bp Feature: RT Description: RVT_N Location: 398336-398534 bp Feature: RT Description: RVT_N Location: 398336-398534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 398579-399227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 398579-399227 bp Feature: domain Description: GIIM Note: maturase Location: 399278-399512 bp Feature: domain Description: GIIM Note: maturase Location: 399278-39951 2 bp Feature: domain Description: HNHc Note: nucleases Location: 399755-399896 bp Feature: domain Description: HNHc Note: nucleases Location: 399755-399896 bp Feature: gene Location: 400052-400690 bp Feature: domain Description: PRK05305 Location: 400076-400685 bp Feature: domain Description: PRK05305 Location: 400076-400685 bp Feature: gene Location: 400715-401584 bp Feature: domain Description: PssA Location: 400847-401528 bp Feature: domain Description: PssA Location: 400847-401 528 bp Feature: gene Location: 3433197-3434540 bp Feature: domain Description: argJ Location: 3433338-3434538 bp Feature: domain Description: argJ Location: 3433338-3434538 bp Feature: gene Location: 3434590-3437400 bp Feature: domain Description: PRK12904 Location: 3434602-3437392 bp Feature: domain Description: PRK1 2904 Location: 3434602-3437392 bp Feature: gene Location: 3437601-3439301 bp Feature: RT Description: RVT_N Location: 3437658-3437895 bp Feature: RT Description: RVT_N Location: 3437658-3437895 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3437946-3438594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3437946-3438594 bp Feature: domain Description: GIIM Note: maturase Location: 3438648-3438879 bp Feature: domain Description: GIIM Note: maturase Location: 3438648-3438879 bp Feature: domain Description: HNHc Note: nucleases Location: 3439095-3439263 bp Feature: domain Description: HNHc Note: nucleases Location: 3439095-3439263 bp Feature: gene Location: 3440517-3441002 bp Feature: domain Description: DciA Location: 3440586-3440841 bp Feature: domain Description: DciA Location: 3440586-3440841 bp Feature: gene Location: 3441083-3442000 bp Feature: domain Description: LpxC Location: 3441086-3441965 bp Feature: domain Description: LpxC Location: 3441 086-3441 965 bp Feature: gene Location: 3996999-3999125 bp Feature: domain Description: lambda_lys_like Location: 3998652-3999108 bp Feature: domain Description: lambda_lys_like Location: 3998652-39991 08 bp Feature: gene Location: 3999138-4001903 bp Feature: domain Description: VgrG Location: 3999180-4001040 bp Feature: domain Description: VgrG Location: 39991 80-4001 040 bp Feature: domain Description: DUF2345 Location: 4001154-4001601 bp Feature: domain Description: DUF2345 Location: 4001 1 54-4001 601 bp Feature: gene Location: 4002466-4003833 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4002931-4003570 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4002931 -4003570 bp Feature: gene Location: 4004514-4005380 bp Feature: domain Description: GlxA Location: 4004538-4004859 bp Feature: domain Description: GlxA Location: 4004538-4004859 bp Feature: domain Description: GyrI-like Location: 4004913-4005375 bp Feature: domain Description: GyrI-like Location: 400491 3-4005375 bp Feature: gene Location: 4005637-4007040 bp Feature: domain Description: 2A0305 Location: 4005682-4007026 bp Feature: domain Description: 2A0305 Location: 4005682-4007026 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ilvH (PRK11895), PRK05479 (ketol-acid reductoisomerase; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK05305 (phosphatidylserine decarboxylase family protein), PssA (COG1183), argJ (PRK05388), PRK12904 (preprotein translocase subunit SecA; Reviewed)
DciA, LpxC (pfam03331), lambda_lys_like, VgrG (COG3501), DUF2345 (pfam10106), RVT-Retrons, GlxA (COG4977), GyrI-like (pfam06445), 2A0305 (TIGR00908)

Seq: NBSN01000002.1 Paraburkholderia fungorum strain FDAARGOS_245 unitig_3_quiver_trim_quiver_pilon, whole genome shotgun sequence (429936 bp)
Overview 1 RT 1: 358673-362809 bp Neighborhood of RT #1 [358673, 362832] STE14 RVT-GII GIIM Rieske_proteo Feature: gene Location: 358673-359332 bp Feature: domain Description: STE14 Location: 358802-359291 bp Feature: domain Description: STE14 Location: 358802 -3592 91 bp Feature: gene Location: 359299-359613 bp Feature: gene Location: 359990-361315 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 360281-360944 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3602 81-360944 bp Feature: domain Description: GIIM Note: maturase Location: 361016-361229 bp Feature: domain Description: GIIM Note: maturase Location: 361016-3612 2 9 bp Feature: gene Location: 361570-361782 bp Feature: gene Location: 362107-362832 bp Feature: domain Description: Rieske_proteo Location: 362248-362809 bp Feature: domain Description: Rieske_proteo Location: 362 2 48-362 809 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT STE14 (COG2020), RVT-GII, GIIM (pfam08388), Rieske_proteo (TIGR01416)

Seq: NBSN01000001.1 Paraburkholderia fungorum strain FDAARGOS_245 unitig_7_quiver_trim_quiver_pilon, whole genome shotgun sequence (338825 bp)
Overview 1 RT 1: 260781-264673 bp Neighborhood of RT #1 [260781, 264714] Resolvase Recombinase Zn_ribbon_recom RVT_N RVT-GII IS5 Feature: gene Location: 260781-262499 bp Feature: domain Description: Resolvase Location: 260802-261240 bp Feature: domain Description: Resolvase Location: 260802-261240 bp Feature: domain Description: Recombinase Location: 261336-261696 bp Feature: domain Description: Recombinase Location: 2613 3 6-261696 bp Feature: domain Description: Zn_ribbon_recom Location: 261741-261945 bp Feature: domain Description: Zn_ribbon_recom Location: 261741-261945 bp Feature: gene Location: 262496-262678 bp Feature: gene Location: 262794-263561 bp Feature: RT Description: RVT_N Location: 262869-263106 bp Feature: RT Description: RVT_N Location: 262869-263 106 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 263157-263535 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 263 157-263 53 5 bp Feature: gene Location: 263602-263832 bp Feature: gene Location: 264118-264714 bp Feature: domain Description: IS5 Location: 264307-264673 bp Feature: domain Description: IS5 Location: 2643 07-264673 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), RVT_N (pfam13655), RVT-GII, IS5 (COG3039)