myRT

myRT report for GCA_002891135.1_ASM289113v1

Download annotations/find similar RTs

Seq: NBSO01000009.1 Burkholderia cenocepacia strain FDAARGOS_189 unitig_13_quiver_quiver_pilon, whole genome shotgun sequence (3547574 bp)
Overview 1 RT 1: 2585952-2590503 bp Neighborhood of RT #1 [2585952, 2590535] HipB RVT-GII D Feature: gene Location: 2585952-2586125 bp Feature: gene Location: 2586258-2586749 bp Feature: domain Description: HipB Location: 2586270-2586486 bp Feature: domain Description: HipB Location: 2586270-2586486 bp Feature: gene Location: 2587321-2588853 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2587732-2588422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2587732-2588422 bp Feature: gene Location: 2588933-2589277 bp Feature: gene Location: 2589465-2590535 bp Feature: domain Description: D Location: 2589519-2590503 bp Feature: domain Description: D Location: 258951 9-2590503 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HipB (COG1396), RVT-GII, D (PHA02561)

Seq: NBSO01000003.1 Burkholderia cenocepacia strain FDAARGOS_189 unitig_1_quiver_trim_quiver_pilon, whole genome shotgun sequence (3217060 bp)
Overview 1 RT 1: 499587-506130 bp 2 RT 2: 545592-547161 bp 3 RT 3: 2177899-2187233 bp Neighborhood of RT #1 [499587, 506144] PRK08133 COG3547 RVT-GII GIIM GDP_MD_SDR_e Gmd Neighborhood of RT #2 [545592, 547592] RVT-GII Neighborhood of RT #3 [2177899, 2187274] MFS_SV2_like MscK RVT-GII GIIM COG3547 ALDH_F7_AASADH Feature: gene Location: 499587-500777 bp Feature: domain Description: PRK08133 Location: 499593-500772 bp Feature: domain Description: PRK08133 Location: 499593-500772 bp Feature: gene Location: 501454-502488 bp Feature: domain Description: COG3547 Location: 501469-502432 bp Feature: domain Description: COG3547 Location: 501469-502 432 bp Feature: gene Location: 502737-504026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 502992-503607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 502 992 -503607 bp Feature: domain Description: GIIM Note: maturase Location: 503667-503868 bp Feature: domain Description: GIIM Note: maturase Location: 503667-503868 bp Feature: gene Location: 504146-505036 bp Feature: domain Description: GDP_MD_SDR_e Location: 504149-505004 bp Feature: domain Description: GDP_MD_SDR_e Location: 504149-505004 bp Feature: gene Location: 505098-506144 bp Feature: domain Description: Gmd Location: 505113-506130 bp Feature: domain Description: Gmd Location: 505113-506130 bp Feature: gene Location: 545592-545729 bp Feature: gene Location: 545790-545966 bp Feature: gene Location: 546060-547592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 546471-547161 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 546471-547161 bp Feature: gene Location: 2177899-2179317 bp Feature: domain Description: MFS_SV2_like Location: 2178019-2179270 bp Feature: domain Description: MFS_SV2 _like Location: 2 178019-2 1792 70 bp Feature: gene Location: 2179766-2182228 bp Feature: domain Description: MscK Location: 2179844-2182187 bp Feature: domain Description: MscK Location: 2 179844-2 182 187 bp Feature: gene Location: 2182372-2183661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2182627-2183242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 182 62 7-2 1832 42 bp Feature: domain Description: GIIM Note: maturase Location: 2183302-2183503 bp Feature: domain Description: GIIM Note: maturase Location: 2 183302 -2 183503 bp Feature: gene Location: 2183910-2184944 bp Feature: domain Description: COG3547 Location: 2183925-2184888 bp Feature: domain Description: COG3547 Location: 2 18392 5-2 184888 bp Feature: gene Location: 2185634-2187274 bp Feature: domain Description: ALDH_F7_AASADH Location: 2185817-2187233 bp Feature: domain Description: ALDH_F7_AASADH Location: 2 185817-2 1872 33 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK08133 (O-succinylhomoserine sulfhydrylase; Validated), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), GDP_MD_SDR_e (cd05260), Gmd (COG1089), MFS_SV2_like (cd17316), MscK (COG3264), ALDH_F7_AASADH (cd07130)

Seq: NBSO01000001.1 Burkholderia cenocepacia strain FDAARGOS_189 unitig_4_quiver_trim_quiver_pilon, whole genome shotgun sequence (875976 bp)
Overview 1 RT 1: 521099-526447 bp Neighborhood of RT #1 [521099, 526470] his_ut_repres FIN RVT-Retrons Histone_HNS MFS_MucK Feature: gene Location: 521099-521854 bp Feature: domain Description: his_ut_repres Location: 521177-521849 bp Feature: domain Description: his_ut_repres Location: 521177-521849 bp Feature: gene Location: 522173-522661 bp Feature: domain Description: FIN Location: 522275-522626 bp Feature: domain Description: FIN Location: 522275-522626 bp Feature: gene Location: 522915-524264 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 523380-524016 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 523 3 80-524016 bp Feature: gene Location: 524569-524919 bp Feature: domain Description: Histone_HNS Location: 524611-524848 bp Feature: domain Description: Histone_HNS Location: 524611-524848 bp Feature: gene Location: 525223-526470 bp Feature: domain Description: MFS_MucK Location: 525313-526447 bp Feature: domain Description: MFS_MucK Location: 5253 13 -526447 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816), MFS_MucK (cd17371)

Seq: NBSO01000002.1 Burkholderia cenocepacia strain FDAARGOS_189 unitig_6_quiver_trim_quiver_pilon, whole genome shotgun sequence (92661 bp)
Overview 1 RT 1: 29586-34708 bp Neighborhood of RT #1 [29586, 34884] SRAP RVT-GII COG4544 Feature: gene Location: 29586-30572 bp Feature: gene Location: 31268-32179 bp Feature: domain Description: SRAP Location: 31628-32144 bp Feature: domain Description: SRAP Location: 31628-3214 4 bp Feature: gene Location: 32235-33767 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32646-33336 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3264 6-33336 bp Feature: gene Location: 33869-34051 bp Feature: gene Location: 34168-34884 bp Feature: domain Description: COG4544 Location: 34273-34708 bp Feature: domain Description: COG4 54 4 Location: 34 273-34 708 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SRAP (pfam02586), RVT-GII, COG4544 (Uncharacterized conserved protein )