myRT

myRT report for GCA_002891275.1_ASM289127v1

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Seq: POVW01000002.1 Enterococcus faecium strain FDAARGOS_326 scf7180000000008_quiver_pilon, whole genome shotgun sequence (2932340 bp)
Overview 1 RT 1: 388259-394899 bp 2 RT 2: 1819312-1826143 bp 3 RT 3: 1958301-1975174 bp 4 RT 4: 2349449-2362194 bp Neighborhood of RT #1 [388259, 394940] TcpE AAA_10 RVT-GII AAA_10 Transposase_mut Neighborhood of RT #2 [1819312, 1826151] PRK13354 CE4_DAC_u3_5s RVT-GII GIIM AcrR CcmA Neighborhood of RT #3 [1958301, 1975194] AAA_10 RVT-GII AAA_10 ArdA RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc FtsK Neighborhood of RT #4 [2349449, 2362194] AAA_10 RVT-GII AAA_10 TcpE ArdA RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans Feature: gene Location: 388259-388648 bp Feature: domain Description: TcpE Location: 388277-388577 bp Feature: domain Description: TcpE Location: 388277-388577 bp Feature: gene Location: 388635-390185 bp Feature: domain Description: AAA_10 Location: 389964-390147 bp Feature: domain Description: AAA_1 0 Location: 389964-3901 47 bp Feature: gene Location: 390882-392708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 391182-391881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 391 1 82-391 881 bp Feature: gene Location: 392842-393660 bp Feature: domain Description: AAA_10 Location: 392848-393646 bp Feature: domain Description: AAA_1 0 Location: 392848-393646 bp Feature: gene Location: 393753-394940 bp Feature: domain Description: Transposase_mut Location: 393756-394899 bp Feature: domain Description: Transposase_mut Location: 393756-394899 bp Feature: gene Location: 1819312-1820568 bp Feature: domain Description: PRK13354 Location: 1819315-1820560 bp Feature: domain Description: PRK1 3354 Location: 1 81 931 5-1 820560 bp Feature: gene Location: 1821124-1822449 bp Feature: domain Description: CE4_DAC_u3_5s Location: 1821817-1822210 bp Feature: domain Description: CE4_DAC_u3_5s Location: 1 821 81 7-1 82221 0 bp Feature: gene Location: 1822542-1823930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1822863-1823478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 822863-1 823478 bp Feature: domain Description: GIIM Note: maturase Location: 1823535-1823751 bp Feature: domain Description: GIIM Note: maturase Location: 1 823535-1 823751 bp Feature: gene Location: 1824417-1825016 bp Feature: domain Description: AcrR Location: 1824435-1824921 bp Feature: domain Description: AcrR Location: 1 824435-1 824921 bp Feature: gene Location: 1825270-1826151 bp Feature: domain Description: CcmA Location: 1825273-1826143 bp Feature: domain Description: CcmA Location: 1 825273-1 8261 43 bp Feature: gene Location: 1958301-1960484 bp Feature: gene Location: 1960487-1961404 bp Feature: domain Description: AAA_10 Location: 1960493-1961372 bp Feature: domain Description: AAA_1 0 Location: 1 960493-1 961 372 bp Feature: gene Location: 1961538-1963322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1961796-1962495 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 961 796-1 962495 bp Feature: gene Location: 1964061-1965665 bp Feature: domain Description: AAA_10 Location: 1965444-1965630 bp Feature: domain Description: AAA_1 0 Location: 1 965444-1 965630 bp Feature: gene Location: 1966077-1966574 bp Feature: domain Description: ArdA Location: 1966095-1966560 bp Feature: domain Description: ArdA Location: 1 966095-1 966560 bp Feature: gene Location: 1966691-1966858 bp Feature: gene Location: 1967019-1968929 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1967352-1968090 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 967352-1 968090 bp Feature: domain Description: HNHc Note: nucleases Location: 1968645-1968810 bp Feature: domain Description: HNHc Note: nucleases Location: 1 968645-1 96881 0 bp Feature: gene Location: 1969713-1970918 bp Feature: domain Description: HTH_XRE Location: 1969758-1969902 bp Feature: domain Description: HTH_XRE Location: 1 969758-1 969902 bp Feature: domain Description: Rol_Rep_N Location: 1969929-1970196 bp Feature: domain Description: Rol_Rep_N Location: 1 969929-1 9701 96 bp Feature: domain Description: Rep_trans Location: 1970220-1970829 bp Feature: domain Description: Rep_trans Location: 1 970220-1 970829 bp Feature: gene Location: 1971097-1971381 bp Feature: gene Location: 1971475-1973334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1971784-1972525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 971 784-1 972525 bp Feature: domain Description: HNHc Note: nucleases Location: 1973080-1973218 bp Feature: domain Description: HNHc Note: nucleases Location: 1 973080-1 97321 8 bp Feature: gene Location: 1973453-1973683 bp Feature: gene Location: 1974049-1975194 bp Feature: domain Description: FtsK Location: 1974658-1975174 bp Feature: domain Description: FtsK Location: 1 974658-1 9751 74 bp Feature: gene Location: 2349449-2351572 bp Feature: gene Location: 2351577-2352497 bp Feature: domain Description: AAA_10 Location: 2351583-2352462 bp Feature: domain Description: AAA_1 0 Location: 2351 583-2352462 bp Feature: gene Location: 2352631-2354415 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2352889-2353588 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2352889-2353588 bp Feature: gene Location: 2355154-2356704 bp Feature: domain Description: AAA_10 Location: 2356483-2356666 bp Feature: domain Description: AAA_1 0 Location: 2356483-2356666 bp Feature: gene Location: 2356691-2357080 bp Feature: domain Description: TcpE Location: 2356709-2357009 bp Feature: domain Description: TcpE Location: 2356709-2357009 bp Feature: gene Location: 2357140-2357643 bp Feature: domain Description: ArdA Location: 2357158-2357629 bp Feature: domain Description: ArdA Location: 23571 58-2357629 bp Feature: gene Location: 2357645-2357854 bp Feature: gene Location: 2357984-2359894 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2358317-2359055 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 235831 7-2359055 bp Feature: domain Description: HNHc Note: nucleases Location: 2359610-2359775 bp Feature: domain Description: HNHc Note: nucleases Location: 235961 0-2359775 bp Feature: gene Location: 2360774-2361958 bp Feature: domain Description: HTH_XRE Location: 2360804-2360948 bp Feature: domain Description: HTH_XRE Location: 2360804-2360948 bp Feature: domain Description: Rol_Rep_N Location: 2360981-2361245 bp Feature: domain Description: Rol_Rep_N Location: 2360981 -2361 245 bp Feature: domain Description: Rep_trans Location: 2361269-2361881 bp Feature: domain Description: Rep_trans Location: 2361 269-2361 881 bp Feature: gene Location: 2362051-2362194 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TcpE (pfam12648), AAA_10 (pfam12846), RVT-GII, Transposase_mut (pfam00872), PRK13354 (tyrosyl-tRNA synthetase; Provisional), CE4_DAC_u3_5s (cd10972), GIIM (pfam08388), AcrR (COG1309), CcmA (COG4133), ArdA (pfam07275)
HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), FtsK (COG1674)

Seq: POVW01000001.1 Enterococcus faecium strain FDAARGOS_326 scf7180000000010_trim_quiver_pilon, whole genome shotgun sequence (252590 bp)
Overview 1 RT 1: 58205-64052 bp Neighborhood of RT #1 [58205, 64171] VirB4 RVT-GII HNHc Glucosaminidase Peptidase_M23 Feature: gene Location: 58205-59899 bp Feature: domain Description: VirB4 Location: 58523-59207 bp Feature: domain Description: VirB4 Location: 5852 3-592 07 bp Feature: gene Location: 60167-60400 bp Feature: gene Location: 60587-62464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60902-61640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60902 -61640 bp Feature: domain Description: HNHc Note: nucleases Location: 62198-62351 bp Feature: domain Description: HNHc Note: nucleases Location: 62 198-62 351 bp Feature: gene Location: 62652-62972 bp Feature: gene Location: 62972-64171 bp Feature: domain Description: Glucosaminidase Location: 63242-63638 bp Feature: domain Description: Glucosaminidase Location: 632 42 -63638 bp Feature: domain Description: Peptidase_M23 Location: 63815-64052 bp Feature: domain Description: Peptidase_M2 3 Location: 63815-64052 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4 (COG3451), RVT-GII, HNHc (smart00507), Glucosaminidase (pfam01832), Peptidase_M23 (pfam01551)

Seq: POVW01000004.1 Enterococcus faecium strain FDAARGOS_326 scf7180000000011_quiver_pilon, whole genome shotgun sequence (57048 bp)
Overview 1 RT 1: 16351-19971 bp 2 RT 2: 45250-50425 bp Neighborhood of RT #1 [16351, 20003] HsdM RVT-AbiP2 Tra8 Tra8 Neighborhood of RT #2 [45250, 50425] Rve HsdM RVT-AbiP2 Tra8 Feature: gene Location: 16351-17262 bp Feature: domain Description: HsdM Location: 16372-17251 bp Feature: domain Description: HsdM Location: 163 72-17251 bp Feature: gene Location: 17600-18193 bp Feature: gene Location: 18196-19074 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 18544-19009 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 18544-19009 bp Feature: gene Location: 19084-19434 bp Feature: domain Description: Tra8 Location: 19096-19432 bp Feature: domain Description: Tra8 Location: 19096-1943 2 bp Feature: gene Location: 19515-20003 bp Feature: domain Description: Tra8 Location: 19518-19971 bp Feature: domain Description: Tra8 Location: 19518-19971 bp Feature: gene Location: 45250-45936 bp Feature: domain Description: Rve Location: 45259-45907 bp Feature: domain Description: Rve Location: 45259-45907 bp Feature: gene Location: 45959-47437 bp Feature: domain Description: HsdM Location: 45980-47405 bp Feature: domain Description: HsdM Location: 45980-47405 bp Feature: gene Location: 47775-49250 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 48123-48588 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 48123 -48588 bp Feature: gene Location: 49228-50181 bp Feature: domain Description: Tra8 Location: 49231-50158 bp Feature: domain Description: Tra8 Location: 4923 1-50158 bp Feature: gene Location: 50264-50425 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM (COG0286), RVT-AbiP2, Tra8 (COG2826), Rve (COG3316)