myRT

myRT report for GCA_002891785.1_ASM289178v1

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Seq: LAXM01000002.1 Vibrio vulnificus strain CIP8190 Contigs_2, whole genome shotgun sequence (324898 bp)
Overview 1 RT 1: 65501-71039 bp Neighborhood of RT #1 [65501, 71269] RVT-GII GIIM GAF PleD BatD Feature: gene Location: 65501-65671 bp Feature: gene Location: 65679-65825 bp Feature: gene Location: 65976-67190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66120-66741 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 661 20-66741 bp Feature: domain Description: GIIM Note: maturase Location: 66792-67005 bp Feature: domain Description: GIIM Note: maturase Location: 66792-67005 bp Feature: gene Location: 67432-69552 bp Feature: domain Description: GAF Location: 68020-68440 bp Feature: domain Description: GAF Location: 68020-68440 bp Feature: domain Description: PleD Location: 68941-69529 bp Feature: domain Description: PleD Location: 68941 -69529 bp Feature: gene Location: 69638-71269 bp Feature: domain Description: BatD Location: 69683-71039 bp Feature: domain Description: BatD Location: 69683-71 039 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), GAF (smart00065), PleD (COG3706), BatD (pfam13584)

Seq: LAXM01000003.1 Vibrio vulnificus strain CIP8190 Contigs_3, whole genome shotgun sequence (264249 bp)
Overview 1 RT 1: 199587-204631 bp Neighborhood of RT #1 [199587, 204631] OmpR DUF3404 BaeS RVT-GII GIIM HTH_29 HTH_33 DDE_3 Feature: gene Location: 199587-200249 bp Feature: domain Description: OmpR Location: 199599-200244 bp Feature: domain Description: OmpR Location: 199599-2 002 44 bp Feature: gene Location: 200224-201675 bp Feature: domain Description: DUF3404 Location: 200278-201046 bp Feature: domain Description: DUF3404 Location: 2 002 78-2 01046 bp Feature: domain Description: BaeS Location: 201046-201658 bp Feature: domain Description: BaeS Location: 2 01046-2 01658 bp Feature: gene Location: 201848-203101 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 202031-202652 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 02 031-2 02 652 bp Feature: domain Description: GIIM Note: maturase Location: 202703-202916 bp Feature: domain Description: GIIM Note: maturase Location: 2 02 703-2 02 916 bp Feature: gene Location: 203169-204209 bp Feature: domain Description: HTH_29 Location: 203265-203430 bp Feature: domain Description: HTH_2 9 Location: 2 032 65-2 03430 bp Feature: domain Description: HTH_33 Location: 203463-203637 bp Feature: domain Description: HTH_33 Location: 2 03463-2 03637 bp Feature: domain Description: DDE_3 Location: 203670-204099 bp Feature: domain Description: DDE_3 Location: 2 03670-2 04099 bp Feature: gene Location: 204461-204631 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OmpR (COG0745), DUF3404 (pfam11884), BaeS (COG0642), RVT-GII, GIIM (pfam08388), HTH_29 (pfam13551), HTH_33 (pfam13592), DDE_3 (pfam13358)

Seq: LAXM01000007.1 Vibrio vulnificus strain CIP8190 Contigs_7, whole genome shotgun sequence (1571351 bp)
Overview 1 RT 1: 974407-977679 bp 2 RT 2: 1019787-1023718 bp Neighborhood of RT #1 [974407, 977693] RVT-GII GIIM PRK13538 ccmB Neighborhood of RT #2 [1019787, 1023843] RVT-GII GIIM LysR PRK10693 Feature: gene Location: 974407-974577 bp Feature: gene Location: 974585-974731 bp Feature: gene Location: 974882-976096 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 975026-975647 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 975026-975647 bp Feature: domain Description: GIIM Note: maturase Location: 975698-975911 bp Feature: domain Description: GIIM Note: maturase Location: 975698-975911 bp Feature: gene Location: 976406-977023 bp Feature: domain Description: PRK13538 Location: 976409-977018 bp Feature: domain Description: PRK13 53 8 Location: 976409-977018 bp Feature: gene Location: 977025-977693 bp Feature: domain Description: ccmB Location: 977049-977679 bp Feature: domain Description: ccmB Location: 977049-977679 bp Feature: gene Location: 1019787-1019957 bp Feature: gene Location: 1019965-1020111 bp Feature: gene Location: 1020262-1021476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1020406-1021027 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1020406-1021027 bp Feature: domain Description: GIIM Note: maturase Location: 1021078-1021291 bp Feature: domain Description: GIIM Note: maturase Location: 1021078-1021291 bp Feature: gene Location: 1021583-1022470 bp Feature: domain Description: LysR Location: 1021598-1022453 bp Feature: domain Description: LysR Location: 1021598-1022453 bp Feature: gene Location: 1022737-1023843 bp Feature: domain Description: PRK10693 Location: 1022881-1023718 bp Feature: domain Description: PRK10693 Location: 1022881-1023 718 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK13538 (cytochrome c biogenesis heme-transporting ATPase CcmA), ccmB (TIGR01190), LysR (COG0583), PRK10693 (two-component system response regulator RssB)

Seq: LAXM01000008.1 Vibrio vulnificus strain CIP8190 Contigs_8, whole genome shotgun sequence (413640 bp)
Overview 1 RT 1: 309676-314486 bp Neighborhood of RT #1 [309676, 314486] KatG COG3169 RVT-GII GIIM Feature: gene Location: 309676-311847 bp Feature: domain Description: KatG Location: 309694-311845 bp Feature: domain Description: KatG Location: 309694 -31184 5 bp Feature: gene Location: 311911-312261 bp Feature: domain Description: COG3169 Location: 311914-312250 bp Feature: domain Description: COG3169 Location: 311914 -312250 bp Feature: gene Location: 312384-313667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 312597-313218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 312597-313218 bp Feature: domain Description: GIIM Note: maturase Location: 313269-313482 bp Feature: domain Description: GIIM Note: maturase Location: 313269-3134 82 bp Feature: gene Location: 313903-314073 bp Feature: gene Location: 314085-314486 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KatG (COG0376), COG3169 (Uncharacterized conserved protein, DUF486 family ), RVT-GII, GIIM (pfam08388)

Seq: LAXM01000009.1 Vibrio vulnificus strain CIP8190 Contigs_9, whole genome shotgun sequence (1409462 bp)
Overview 1 RT 1: 643144-649172 bp Neighborhood of RT #1 [643144, 649240] RVT-GII GIIM SDF Feature: gene Location: 643144-644322 bp Feature: gene Location: 644462-645748 bp Feature: gene Location: 645873-647156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 646086-646707 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 646086-646707 bp Feature: domain Description: GIIM Note: maturase Location: 646758-646971 bp Feature: domain Description: GIIM Note: maturase Location: 64675 8-646971 bp Feature: gene Location: 647353-647691 bp Feature: gene Location: 647960-649240 bp Feature: domain Description: SDF Location: 647978-649172 bp Feature: domain Description: SDF Location: 647978-649172 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), SDF (pfam00375)