myRT

myRT report for GCA_002891805.1_ASM289180v1

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Seq: LAXN01000001.1 Vibrio vulnificus strain 94-8-112 Contigs_1, whole genome shotgun sequence (289034 bp)
Overview 1 RT 1: 216648-219789 bp Neighborhood of RT #1 [216648, 220082] RVT-GII GIIM CSP_CDS YsdA CAP_ED Feature: gene Location: 216648-216818 bp Feature: gene Location: 216826-216972 bp Feature: gene Location: 217123-218337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 217267-217888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 7267-21 7888 bp Feature: domain Description: GIIM Note: maturase Location: 217939-218152 bp Feature: domain Description: GIIM Note: maturase Location: 21 7939-21 81 52 bp Feature: gene Location: 218543-219139 bp Feature: domain Description: CSP_CDS Location: 218558-218741 bp Feature: domain Description: CSP_CDS Location: 21 8558-21 8741 bp Feature: domain Description: YsdA Location: 218840-219086 bp Feature: domain Description: YsdA Location: 21 8840-21 9086 bp Feature: gene Location: 219390-220082 bp Feature: domain Description: CAP_ED Location: 219495-219789 bp Feature: domain Description: CAP_ED Location: 21 9495-21 9789 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), CSP_CDS (cd04458), YsdA (COG3326), CAP_ED (cl00047)

Seq: LAXN01000011.1 Vibrio vulnificus strain 94-8-112 Contigs_11, whole genome shotgun sequence (898317 bp)
Overview 1 RT 1: 132020-138048 bp Neighborhood of RT #1 [132020, 138116] RVT-GII GIIM SDF Feature: gene Location: 132020-133198 bp Feature: gene Location: 133338-134624 bp Feature: gene Location: 134749-136032 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 134962-135583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 134962 -135583 bp Feature: domain Description: GIIM Note: maturase Location: 135634-135847 bp Feature: domain Description: GIIM Note: maturase Location: 135634-135847 bp Feature: gene Location: 136229-136567 bp Feature: gene Location: 136836-138116 bp Feature: domain Description: SDF Location: 136854-138048 bp Feature: domain Description: SDF Location: 136854-138048 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), SDF (pfam00375)

Seq: LAXN01000002.1 Vibrio vulnificus strain 94-8-112 Contigs_2, whole genome shotgun sequence (380186 bp)
Overview 1 RT 1: 120792-126330 bp Neighborhood of RT #1 [120792, 126560] RVT-GII GIIM GAF PleD BatD Feature: gene Location: 120792-120962 bp Feature: gene Location: 120970-121116 bp Feature: gene Location: 121267-122481 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 121411-122032 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 121411-12203 2 bp Feature: domain Description: GIIM Note: maturase Location: 122083-122296 bp Feature: domain Description: GIIM Note: maturase Location: 122083 -122296 bp Feature: gene Location: 122723-124843 bp Feature: domain Description: GAF Location: 123311-123731 bp Feature: domain Description: GAF Location: 123 3 11-123 73 1 bp Feature: domain Description: PleD Location: 124232-124820 bp Feature: domain Description: PleD Location: 12423 2-124820 bp Feature: gene Location: 124929-126560 bp Feature: domain Description: BatD Location: 124974-126330 bp Feature: domain Description: BatD Location: 124974-1263 3 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), GAF (smart00065), PleD (COG3706), BatD (pfam13584)

Seq: LAXN01000003.1 Vibrio vulnificus strain 94-8-112 Contigs_3, whole genome shotgun sequence (264248 bp)
Overview 1 RT 1: 199586-204759 bp Neighborhood of RT #1 [199586, 204759] OmpR DUF3404 BaeS RVT-GII GIIM HTH_29 HTH_33 DDE_3 Feature: gene Location: 199586-200248 bp Feature: domain Description: OmpR Location: 199598-200243 bp Feature: domain Description: OmpR Location: 199598-20024 3 bp Feature: gene Location: 200223-201674 bp Feature: domain Description: DUF3404 Location: 200277-201045 bp Feature: domain Description: DUF34 04 Location: 200277-20104 5 bp Feature: domain Description: BaeS Location: 201045-201657 bp Feature: domain Description: BaeS Location: 20104 5-201657 bp Feature: gene Location: 201847-203100 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 202030-202651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 202030-202651 bp Feature: domain Description: GIIM Note: maturase Location: 202702-202915 bp Feature: domain Description: GIIM Note: maturase Location: 202702-202915 bp Feature: gene Location: 203168-204208 bp Feature: domain Description: HTH_29 Location: 203264-203429 bp Feature: domain Description: HTH_29 Location: 203264 -2034 29 bp Feature: domain Description: HTH_33 Location: 203462-203636 bp Feature: domain Description: HTH_33 Location: 2034 62-203636 bp Feature: domain Description: DDE_3 Location: 203669-204098 bp Feature: domain Description: DDE_3 Location: 203669-204 098 bp Feature: gene Location: 204388-204759 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OmpR (COG0745), DUF3404 (pfam11884), BaeS (COG0642), RVT-GII, GIIM (pfam08388), HTH_29 (pfam13551), HTH_33 (pfam13592), DDE_3 (pfam13358)

Seq: LAXN01000007.1 Vibrio vulnificus strain 94-8-112 Contigs_7, whole genome shotgun sequence (1571355 bp)
Overview 1 RT 1: 974411-977683 bp 2 RT 2: 1019791-1023722 bp Neighborhood of RT #1 [974411, 977697] RVT-GII GIIM PRK13538 ccmB Neighborhood of RT #2 [1019791, 1023847] RVT-GII GIIM LysR PRK10693 Feature: gene Location: 974411-974581 bp Feature: gene Location: 974589-974735 bp Feature: gene Location: 974886-976100 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 975030-975651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 975 030-975 65 1 bp Feature: domain Description: GIIM Note: maturase Location: 975702-975915 bp Feature: domain Description: GIIM Note: maturase Location: 975 702-975 915 bp Feature: gene Location: 976410-977027 bp Feature: domain Description: PRK13538 Location: 976413-977022 bp Feature: domain Description: PRK135 38 Location: 976413-977022 bp Feature: gene Location: 977029-977697 bp Feature: domain Description: ccmB Location: 977053-977683 bp Feature: domain Description: ccmB Location: 97705 3-977683 bp Feature: gene Location: 1019791-1019961 bp Feature: gene Location: 1019969-1020115 bp Feature: gene Location: 1020266-1021480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1020410-1021031 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1020410-1021031 bp Feature: domain Description: GIIM Note: maturase Location: 1021082-1021295 bp Feature: domain Description: GIIM Note: maturase Location: 1021082-1021295 bp Feature: gene Location: 1021587-1022474 bp Feature: domain Description: LysR Location: 1021602-1022457 bp Feature: domain Description: LysR Location: 1021602-102245 7 bp Feature: gene Location: 1022741-1023847 bp Feature: domain Description: PRK10693 Location: 1022885-1023722 bp Feature: domain Description: PRK10693 Location: 1022885 -1023722 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK13538 (cytochrome c biogenesis heme-transporting ATPase CcmA), ccmB (TIGR01190), LysR (COG0583), PRK10693 (two-component system response regulator RssB)

Seq: LAXN01000009.1 Vibrio vulnificus strain 94-8-112 Contigs_9, whole genome shotgun sequence (395553 bp)
Overview 1 RT 1: 291588-296398 bp Neighborhood of RT #1 [291588, 296398] KatG COG3169 RVT-GII GIIM Feature: gene Location: 291588-293759 bp Feature: domain Description: KatG Location: 291606-293757 bp Feature: domain Description: KatG Location: 2916 06 -293757 bp Feature: gene Location: 293823-294173 bp Feature: domain Description: COG3169 Location: 293826-294162 bp Feature: domain Description: COG316 9 Location: 293826 -29416 2 bp Feature: gene Location: 294296-295579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 294509-295130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 294509-295130 bp Feature: domain Description: GIIM Note: maturase Location: 295181-295394 bp Feature: domain Description: GIIM Note: maturase Location: 295181-295394 bp Feature: gene Location: 295815-295985 bp Feature: gene Location: 295997-296398 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KatG (COG0376), COG3169 (Uncharacterized conserved protein, DUF486 family ), RVT-GII, GIIM (pfam08388)