myRT

myRT report for GCA_002893285.1_ASM289328v1

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Seq: NJIA01000012.1 Cylindrospermopsis raciborskii S01 NODE_14, whole genome shotgun sequence (13454 bp)
Overview 1 RT 1: 4780-8282 bp Neighborhood of RT #1 [4780, 8299] cyt_b559_alpha CpeS RVT_N RVT-GII RVT-GII GIIM CpeS HEAT Feature: gene Location: 4780-5028 bp Feature: domain Description: cyt_b559_alpha Location: 4786-5017 bp Feature: domain Description: cyt_b559_alpha Location: 4786-501 7 bp Feature: gene Location: 5182-5445 bp Feature: domain Description: CpeS Location: 5185-5392 bp Feature: domain Description: CpeS Location: 51 85-5392 bp Feature: gene Location: 5599-6699 bp Feature: RT Description: RVT_N Location: 5635-5806 bp Feature: RT Description: RVT_N Location: 5635-5806 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5827-6181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5827-61 81 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6181-6346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 81 -6346 bp Feature: domain Description: GIIM Note: maturase Location: 6406-6598 bp Feature: domain Description: GIIM Note: maturase Location: 6406-6598 bp Feature: gene Location: 7223-7489 bp Feature: domain Description: CpeS Location: 7229-7457 bp Feature: domain Description: CpeS Location: 7229-7457 bp Feature: gene Location: 7628-8299 bp Feature: domain Description: HEAT Location: 7637-8282 bp Feature: domain Description: HEAT Location: 7637-8282 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT cyt_b559_alpha (TIGR01332), CpeS (pfam09367), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HEAT (sd00044)

Seq: NJIA01000001.1 Cylindrospermopsis raciborskii S01 NODE_2, whole genome shotgun sequence (167091 bp)
Overview 1 RT 1: 88523-92799 bp Neighborhood of RT #1 [88523, 92861] RVT_N RVT-GII GIIM QueC MviM Feature: gene Location: 88523-88660 bp Feature: gene Location: 88737-88937 bp Feature: gene Location: 89084-90784 bp Feature: RT Description: RVT_N Location: 89111-89321 bp Feature: RT Description: RVT_N Location: 89111-8932 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89375-90056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89375-90056 bp Feature: domain Description: GIIM Note: maturase Location: 90155-90389 bp Feature: domain Description: GIIM Note: maturase Location: 90155-90389 bp Feature: gene Location: 90917-91585 bp Feature: domain Description: QueC Location: 90920-91577 bp Feature: domain Description: QueC Location: 9092 0-91577 bp Feature: gene Location: 91782-92861 bp Feature: domain Description: MviM Location: 91848-92799 bp Feature: domain Description: MviM Location: 91848-92 799 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), QueC (pfam06508), MviM (COG0673)

Seq: NJIA01000029.1 Cylindrospermopsis raciborskii S01 NODE_33, whole genome shotgun sequence (31950 bp)
Overview 1 RT 1: 4332-9018 bp Neighborhood of RT #1 [4332, 9023] N_methyl Pilin_GH KOG0404 RVT_N RVT-GII GIIM KOG0404 TRX_NTR TRX_NTR Feature: gene Location: 4332-4856 bp Feature: domain Description: N_methyl Location: 4392-4461 bp Feature: domain Description: N_methyl Location: 43 92-4461 bp Feature: domain Description: Pilin_GH Location: 4497-4824 bp Feature: domain Description: Pilin_GH Location: 4497-4824 bp Feature: gene Location: 5071-5259 bp Feature: domain Description: KOG0404 Location: 5101-5248 bp Feature: domain Description: KOG0404 Location: 5101-5248 bp Feature: gene Location: 5913-7478 bp Feature: RT Description: RVT_N Location: 5997-6210 bp Feature: RT Description: RVT_N Location: 5997-6210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6255-6876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6255-6876 bp Feature: domain Description: GIIM Note: maturase Location: 6999-7221 bp Feature: domain Description: GIIM Note: maturase Location: 6999-7221 bp Feature: gene Location: 7544-8698 bp Feature: domain Description: KOG0404 Location: 7547-8279 bp Feature: domain Description: KOG0404 Location: 7547-8279 bp Feature: domain Description: TRX_NTR Location: 8399-8684 bp Feature: domain Description: TRX_NTR Location: 83 99-8684 bp Feature: gene Location: 8862-9023 bp Feature: domain Description: TRX_NTR Location: 8868-9018 bp Feature: domain Description: TRX_NTR Location: 8868-9018 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT N_methyl (pfam07963), Pilin_GH (pfam16734), KOG0404 (KOG0404, Thioredoxin reductase ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TRX_NTR (cd02949)

Seq: NJIA01000279.1 Cylindrospermopsis raciborskii S01 NODE_706, whole genome shotgun sequence (189164 bp)
Overview 1 RT 1: 49450-54569 bp Neighborhood of RT #1 [49450, 54583] RNR_II_monomer RVT-GII GIIM RTPR DUF3598 Feature: gene Location: 49450-49713 bp Feature: domain Description: RNR_II_monomer Location: 49513-49708 bp Feature: domain Description: RNR_II_monomer Location: 4 9513-4 9708 bp Feature: gene Location: 50143-50295 bp Feature: gene Location: 50322-51560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50499-51096 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 504 99-51096 bp Feature: domain Description: GIIM Note: maturase Location: 51183-51417 bp Feature: domain Description: GIIM Note: maturase Location: 51183-514 17 bp Feature: gene Location: 51744-53699 bp Feature: domain Description: RTPR Location: 51747-53673 bp Feature: domain Description: RTPR Location: 5174 7-53673 bp Feature: gene Location: 53729-54583 bp Feature: domain Description: DUF3598 Location: 53738-54569 bp Feature: domain Description: DUF3598 Location: 53738-54 569 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RNR_II_monomer (cd01676), RVT-GII, GIIM (pfam08388), RTPR (TIGR02505), DUF3598 (pfam12204)