myRT

myRT report for GCA_002894545.1_ASM289454v1

Download annotations/find similar RTs

Seq: PPCK01000071.1 Enterococcus faecium strain SAU16 NODE_100_length_38848_cov_62.222225, whole genome shotgun sequence (38908 bp)
Overview 1 RT 1: 16847-22700 bp Neighborhood of RT #1 [16847, 22819] VirB4 RVT-GII HNHc Glucosaminidase Peptidase_M23 Feature: gene Location: 16847-18541 bp Feature: domain Description: VirB4 Location: 17165-17849 bp Feature: domain Description: VirB4 Location: 1 71 65-1 7849 bp Feature: gene Location: 18809-19042 bp Feature: gene Location: 19229-21106 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19544-20282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 9544-20282 bp Feature: domain Description: HNHc Note: nucleases Location: 20840-20993 bp Feature: domain Description: HNHc Note: nucleases Location: 20840-20993 bp Feature: gene Location: 21294-21614 bp Feature: gene Location: 21614-22819 bp Feature: domain Description: Glucosaminidase Location: 21890-22286 bp Feature: domain Description: Glucosaminidase Location: 21 890-22286 bp Feature: domain Description: Peptidase_M23 Location: 22463-22700 bp Feature: domain Description: Peptidase_M23 Location: 22463-22700 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4 (COG3451), RVT-GII, HNHc (smart00507), Glucosaminidase (pfam01832), Peptidase_M23 (pfam01551)

Seq: PPCK01000211.1 Enterococcus faecium strain SAU16 NODE_354_length_86849_cov_53.820435, whole genome shotgun sequence (86909 bp)
Overview 1 RT 1: 48586-54611 bp Neighborhood of RT #1 [48586, 54611] Arm-DNA-bind_4 Phage_int_SAM_3 INT_ICEBs1_C_like Abi_2 RVT-AbiP2 HTH_XRE Feature: gene Location: 48586-49731 bp Feature: domain Description: Arm-DNA-bind_4 Location: 48631-48763 bp Feature: domain Description: Arm-DNA-bind_4 Location: 48631-48763 bp Feature: domain Description: Phage_int_SAM_3 Location: 48787-48955 bp Feature: domain Description: Phage_int_SAM_3 Location: 48787-48955 bp Feature: domain Description: INT_ICEBs1_C_like Location: 49120-49669 bp Feature: domain Description: INT_ICEBs1_C_like Location: 4912 0-49669 bp Feature: gene Location: 50379-51599 bp Feature: domain Description: Abi_2 Location: 50472-51294 bp Feature: domain Description: Abi_2 Location: 50472 -512 94 bp Feature: gene Location: 51815-53314 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 52223-52679 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 52 2 2 3-52 679 bp Feature: gene Location: 53485-53721 bp Feature: domain Description: HTH_XRE Location: 53527-53713 bp Feature: domain Description: HTH_XRE Location: 5352 7-53713 bp Feature: gene Location: 53835-54611 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_4 (pfam14657), Phage_int_SAM_3 (pfam14659), INT_ICEBs1_C_like (cd01189), Abi_2 (pfam07751), RVT-AbiP2, HTH_XRE (smart00530)