myRT

myRT report for GCA_002894565.1_ASM289456v1

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Seq: PPCL01000001.1 Enterococcus faecium strain SAU27 NODE_1_length_92802_cov_57.695698, whole genome shotgun sequence (92862 bp)
Overview 1 RT 1: 27154-33003 bp Neighborhood of RT #1 [27154, 33026] PRK06019 Adenylsuccinate_lyase_1 RVT-GII GIIM PRK09362 Feature: gene Location: 27154-28278 bp Feature: domain Description: PRK06019 Location: 27178-28267 bp Feature: domain Description: PRK0601 9 Location: 271 78-28267 bp Feature: gene Location: 28291-29586 bp Feature: domain Description: Adenylsuccinate_lyase_1 Location: 28303-29572 bp Feature: domain Description: Adenylsuccinate_lyase_1 Location: 28303-29572 bp Feature: gene Location: 29708-31096 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30029-30644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30029-30644 bp Feature: domain Description: GIIM Note: maturase Location: 30701-30917 bp Feature: domain Description: GIIM Note: maturase Location: 30701 -3091 7 bp Feature: gene Location: 31665-32042 bp Feature: gene Location: 32298-33026 bp Feature: domain Description: PRK09362 Location: 32301-33003 bp Feature: domain Description: PRK09362 Location: 32301 -33003 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06019 (phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed), Adenylsuccinate_lyase_1 (cd01360), RVT-GII, GIIM (pfam08388), PRK09362 (phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed)

Seq: PPCL01000002.1 Enterococcus faecium strain SAU27 NODE_2_length_88189_cov_60.469254, whole genome shotgun sequence (88249 bp)
Overview 1 RT 1: 79816-86207 bp Neighborhood of RT #1 [79816, 86221] FtsK HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA Feature: gene Location: 79816-81201 bp Feature: domain Description: FtsK Location: 80425-81058 bp Feature: domain Description: FtsK Location: 8042 5-81058 bp Feature: gene Location: 81380-82585 bp Feature: domain Description: HTH_XRE Location: 81425-81569 bp Feature: domain Description: HTH_XRE Location: 8142 5-81569 bp Feature: domain Description: Rol_Rep_N Location: 81596-81863 bp Feature: domain Description: Rol_Rep_N Location: 81596-81863 bp Feature: domain Description: Rep_trans Location: 81887-82496 bp Feature: domain Description: Rep_trans Location: 81887-82 496 bp Feature: gene Location: 83369-85279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83702-84440 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83702 -84440 bp Feature: domain Description: HNHc Note: nucleases Location: 84995-85160 bp Feature: domain Description: HNHc Note: nucleases Location: 84995-85160 bp Feature: gene Location: 85440-85607 bp Feature: gene Location: 85724-86221 bp Feature: domain Description: ArdA Location: 85742-86207 bp Feature: domain Description: ArdA Location: 85742 -862 07 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FtsK (COG1674), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), RVT-GII, HNHc (smart00507), ArdA (pfam07275)

Seq: PPCL01000039.1 Enterococcus faecium strain SAU27 NODE_42_length_32329_cov_63.992390, whole genome shotgun sequence (32389 bp)
Overview 1 RT 1: 6713-11993 bp Neighborhood of RT #1 [6713, 12685] Glucosaminidase Peptidase_M23 RVT-GII HNHc VirB4 Feature: gene Location: 6713-7918 bp Feature: domain Description: Glucosaminidase Location: 6989-7385 bp Feature: domain Description: Glucosaminidase Location: 6989-73 85 bp Feature: domain Description: Peptidase_M23 Location: 7562-7799 bp Feature: domain Description: Peptidase_M23 Location: 7562-7799 bp Feature: gene Location: 7918-8238 bp Feature: gene Location: 8426-10303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8741-9479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8741-9479 bp Feature: domain Description: HNHc Note: nucleases Location: 10037-10190 bp Feature: domain Description: HNHc Note: nucleases Location: 1003 7-10190 bp Feature: gene Location: 10490-10723 bp Feature: gene Location: 10991-12685 bp Feature: domain Description: VirB4 Location: 11309-11993 bp Feature: domain Description: VirB4 Location: 113 09-11993 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4 (COG3451), Glucosaminidase (pfam01832), Peptidase_M23 (pfam01551), RVT-GII, HNHc (smart00507)

Seq: PPCL01000078.1 Enterococcus faecium strain SAU27 NODE_85_length_2628_cov_155.982117, whole genome shotgun sequence (2688 bp)
Overview 1 RT 1: 745-1744 bp Neighborhood of RT #1 [745, 2571] RVT-GII Feature: gene Location: 745-2571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1045-1744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104 5-174 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII