myRT

myRT report for GCA_002895295.1_ASM289529v1

Download annotations/find similar RTs

Seq: PPCU01000014.1 Escherichia coli strain ICBUR15 LRAT42_S42_L001_R1_001__paired__contig_14, whole genome shotgun sequence (66979 bp)
Overview 1 RT 1: 22268-28511 bp Neighborhood of RT #1 [22268, 28648] Phage_integrase RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 22268-22534 bp Feature: domain Description: Phage_integrase Location: 22334-22430 bp Feature: domain Description: Phage_integrase Location: 22334-22430 bp Feature: gene Location: 22617-23087 bp Feature: gene Location: 23434-26643 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 23962-24451 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 23962-24451 bp Feature: domain Description: nitrilase Location: 25957-26554 bp Feature: domain Description: nitrilase Location: 25957-26554 bp Feature: gene Location: 26938-27741 bp Feature: domain Description: AbiEi_3_N Location: 26971-27232 bp Feature: domain Description: AbiEi_3_N Location: 26971 -27232 bp Feature: domain Description: AbiEi_3 Location: 27244-27700 bp Feature: domain Description: AbiEi_3 Location: 27244-27700 bp Feature: gene Location: 27728-28648 bp Feature: domain Description: AbiEii Location: 27770-28511 bp Feature: domain Description: AbiEii Location: 27770-2851 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: PPCU01000161.1 Escherichia coli strain ICBUR15 LRAT42_S42_L001_R1_001__paired__contig_161, whole genome shotgun sequence (3087 bp)
Overview 1 RT 1: 187-2518 bp Neighborhood of RT #1 [187, 2583] RVT-GII GIIM PHA02517 Feature: gene Location: 187-1710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 460-1192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 460-1192 bp Feature: domain Description: GIIM Note: maturase Location: 1267-1465 bp Feature: domain Description: GIIM Note: maturase Location: 12 67-1465 bp Feature: gene Location: 1664-2089 bp Feature: gene Location: 2302-2583 bp Feature: domain Description: PHA02517 Location: 2308-2518 bp Feature: domain Description: PHA02 517 Location: 2 308-2 518 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: PPCU01000068.1 Escherichia coli strain ICBUR15 LRAT42_S42_L001_R1_001__paired__contig_68, whole genome shotgun sequence (18836 bp)
Overview 1 RT 1: 1922-5922 bp Neighborhood of RT #1 [1922, 5930] DcuC RVT-GII Asparaginase_2 Feature: gene Location: 1922-3283 bp Feature: domain Description: DcuC Location: 1925-3257 bp Feature: domain Description: DcuC Location: 1925-3 257 bp Feature: gene Location: 3336-3704 bp Feature: gene Location: 3929-4375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4235-4337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 423 5-43 3 7 bp Feature: gene Location: 4423-4572 bp Feature: gene Location: 4899-5930 bp Feature: domain Description: Asparaginase_2 Location: 4989-5922 bp Feature: domain Description: Asparaginase_2 Location: 4989-5922 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DcuC (TIGR00771), RVT-GII, Asparaginase_2 (pfam01112)

Seq: PPCU01000079.1 Escherichia coli strain ICBUR15 LRAT42_S42_L001_R1_001__paired__contig_79, whole genome shotgun sequence (8566 bp)
Overview 1 RT 1: 1-1464 bp Neighborhood of RT #1 [1, 1464] RVT-GII RVT-GII GIIM Feature: gene Location: 1-372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 163-241 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 163-24 1 bp Feature: gene Location: 400-921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 406-688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 06-688 bp Feature: domain Description: GIIM Note: maturase Location: 736-916 bp Feature: domain Description: GIIM Note: maturase Location: 736-916 bp Feature: gene Location: 1020-1166 bp Feature: gene Location: 1276-1464 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)