myRT

myRT report for GCA_002895335.1_ASM289533v1

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Seq: PPCT01000122.1 Escherichia coli strain ICBUR20 LRAT44_S44_L001_R1_001__paired__contig_122, whole genome shotgun sequence (2631 bp)
Overview 1 RT 1: 296-2383 bp Neighborhood of RT #1 [296, 2628] PHA02517 RVT-GII Feature: gene Location: 296-457 bp Feature: gene Location: 505-786 bp Feature: domain Description: PHA02517 Location: 511-721 bp Feature: domain Description: PHA0251 7 Location: 51 1 -721 bp Feature: gene Location: 1378-2628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1651-2383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 651 -2383 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII

Seq: PPCT01000027.1 Escherichia coli strain ICBUR20 LRAT44_S44_L001_R1_001__paired__contig_27, whole genome shotgun sequence (137192 bp)
Overview 1 RT 1: 108664-114695 bp Neighborhood of RT #1 [108664, 114695] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase Phage_ASH Feature: gene Location: 108664-109584 bp Feature: domain Description: AbiEii Location: 108706-109447 bp Feature: domain Description: AbiEii Location: 108706-109447 bp Feature: gene Location: 109571-110374 bp Feature: domain Description: AbiEi_3_N Location: 109604-109865 bp Feature: domain Description: AbiEi_3_N Location: 109604-109865 bp Feature: domain Description: AbiEi_3 Location: 109877-110333 bp Feature: domain Description: AbiEi_3 Location: 109877-110333 bp Feature: gene Location: 110669-113878 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 111197-111686 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 111197-111686 bp Feature: domain Description: nitrilase Location: 113192-113789 bp Feature: domain Description: nitrilase Location: 113192 -113789 bp Feature: gene Location: 114039-114179 bp Feature: domain Description: Phage_ASH Location: 114066-114159 bp Feature: domain Description: Phage_ASH Location: 114066-114159 bp Feature: gene Location: 114225-114695 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), Phage_ASH (pfam10554)

Seq: PPCT01000036.1 Escherichia coli strain ICBUR20 LRAT44_S44_L001_R1_001__paired__contig_36, whole genome shotgun sequence (18531 bp)
Overview 1 RT 1: 12592-16574 bp Neighborhood of RT #1 [12592, 16600] Asparaginase_2 RVT-GII DcuC Feature: gene Location: 12592-13623 bp Feature: domain Description: Asparaginase_2 Location: 12682-13615 bp Feature: domain Description: Asparaginase_2 Location: 12682-13 615 bp Feature: gene Location: 13950-14099 bp Feature: gene Location: 14147-14593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14453-14555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14453 -14555 bp Feature: gene Location: 14815-15186 bp Feature: gene Location: 15239-16600 bp Feature: domain Description: DcuC Location: 15242-16574 bp Feature: domain Description: DcuC Location: 15242-16574 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Asparaginase_2 (pfam01112), RVT-GII, DcuC (TIGR00771)

Seq: PPCT01000046.1 Escherichia coli strain ICBUR20 LRAT44_S44_L001_R1_001__paired__contig_46, whole genome shotgun sequence (27927 bp)
Overview 1 RT 1: 6885-9917 bp Neighborhood of RT #1 [6885, 9917] RVT-GII GIIM RVT-GII Feature: gene Location: 6885-7055 bp Feature: gene Location: 7193-7339 bp Feature: gene Location: 7438-7959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7444-7726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74 4 4 -7726 bp Feature: domain Description: GIIM Note: maturase Location: 7774-7954 bp Feature: domain Description: GIIM Note: maturase Location: 7774 -7954 bp Feature: gene Location: 7987-8526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8317-8395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8317-8395 bp Feature: gene Location: 8557-8754 bp Feature: gene Location: 9012-9917 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)