myRT

myRT report for GCA_002896965.1_ASM289696v1

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Seq: LYMM01000026.1 Novosphingobium guangzhouense strain SA925 contig-123_17, whole genome shotgun sequence (113863 bp)
Overview 1 RT 1: 8156-14967 bp Neighborhood of RT #1 [8156, 14975] PRK12355 TrbC_Ftype RVT-GII GIIM TraC_F_IV TraU Feature: gene Location: 8156-10030 bp Feature: domain Description: PRK12355 Location: 8213-9998 bp Feature: domain Description: PRK1 2355 Location: 821 3-9998 bp Feature: gene Location: 10032-10781 bp Feature: domain Description: TrbC_Ftype Location: 10380-10713 bp Feature: domain Description: TrbC_Ftype Location: 1 0380-1 071 3 bp Feature: gene Location: 10794-12416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11118-11874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 1 1 8-1 1 874 bp Feature: domain Description: GIIM Note: maturase Location: 11952-12150 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 952-1 21 50 bp Feature: gene Location: 12413-12622 bp Feature: gene Location: 13011-14975 bp Feature: domain Description: TraC_F_IV Location: 13095-13830 bp Feature: domain Description: TraC_F_IV Location: 1 3095-1 3830 bp Feature: domain Description: TraU Location: 14049-14967 bp Feature: domain Description: TraU Location: 1 4049-1 4967 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TrbC_Ftype (TIGR02742), RVT-GII, GIIM (pfam08388), TraC_F_IV (pfam11130), TraU (pfam06834), PRK12355 (type-F conjugative transfer system mating-pair stabilization protein TraN)

Seq: LYMM01000049.1 Novosphingobium guangzhouense strain SA925 contig-123_38, whole genome shotgun sequence (40068 bp)
Overview 1 RT 1: 2922-8023 bp Neighborhood of RT #1 [2922, 8023] RelB RVT-GII Intron_maturas2 HNHc Feature: gene Location: 2922-3539 bp Feature: gene Location: 3925-4206 bp Feature: domain Description: RelB Location: 3940-4183 bp Feature: domain Description: RelB Location: 3940-4183 bp Feature: gene Location: 4514-6379 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4781-5612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4781-5612 bp Feature: domain Description: Intron_maturas2 Location: 5753-6011 bp Feature: domain Description: Intron_maturas2 Location: 5753-6011 bp Feature: domain Description: HNHc Note: nucleases Location: 6179-6326 bp Feature: domain Description: HNHc Note: nucleases Location: 6179-632 6 bp Feature: gene Location: 7344-7514 bp Feature: gene Location: 7550-8023 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RelB (pfam04221), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: LYMM01000080.1 Novosphingobium guangzhouense strain SA925 contig-123_66, whole genome shotgun sequence (10075 bp)
Overview 1 RT 1: 4316-8121 bp Neighborhood of RT #1 [4316, 8201] PRK13557 PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 4316-4867 bp Feature: domain Description: PRK13557 Location: 4370-4859 bp Feature: domain Description: PRK13 557 Location: 43 70-4859 bp Feature: gene Location: 5056-5505 bp Feature: domain Description: PHA02517 Location: 5059-5494 bp Feature: domain Description: PHA02517 Location: 5059-5494 bp Feature: gene Location: 5615-7144 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5888-6623 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5888-6623 bp Feature: domain Description: GIIM Note: maturase Location: 6695-6923 bp Feature: domain Description: GIIM Note: maturase Location: 6695-6923 bp Feature: gene Location: 7390-7656 bp Feature: gene Location: 7680-8201 bp Feature: domain Description: PHA02517 Location: 7746-8121 bp Feature: domain Description: PHA02517 Location: 7746-8121 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13557 (histidine kinase; Provisional), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)