myRT

myRT report for GCA_002896995.1_ASM289699v1

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Seq: NIOI01000001.1 Pseudoclostridium thermosuccinogenes strain DSM 5809 scaffold1_size3002637_cov202.5430, whole genome shotgun sequence (3002637 bp)
Overview 1 RT 1: 247098-251113 bp 2 RT 2: 2992747-2996993 bp Neighborhood of RT #1 [247098, 251370] lectin_legume_LecRK_Arcelin_ConA RVT-GII GIIM Big_5 PKD Neighborhood of RT #2 [2992747, 2997652] PHA02517 PHA02517 RVT-GII GIIM HTH_Tnp_1 COG4584 Feature: gene Location: 247098-247547 bp Feature: domain Description: lectin_legume_LecRK_Arcelin_ConA Location: 247218-247434 bp Feature: domain Description: lectin_legume_LecRK_Arcelin_ConA Location: 24721 8-247434 bp Feature: gene Location: 247867-248094 bp Feature: gene Location: 248104-249408 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 248410-249049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24841 0-249049 bp Feature: domain Description: GIIM Note: maturase Location: 249127-249349 bp Feature: domain Description: GIIM Note: maturase Location: 2491 27-249349 bp Feature: gene Location: 249479-250126 bp Feature: gene Location: 250531-251370 bp Feature: domain Description: Big_5 Location: 250576-250867 bp Feature: domain Description: Big_5 Location: 250576-250867 bp Feature: domain Description: PKD Location: 250981-251113 bp Feature: domain Description: PKD Location: 250981 -251 1 1 3 bp Feature: gene Location: 2992747-2993055 bp Feature: domain Description: PHA02517 Location: 2992753-2993014 bp Feature: domain Description: PHA0251 7 Location: 2992753-299301 4 bp Feature: gene Location: 2993060-2993635 bp Feature: domain Description: PHA02517 Location: 2993228-2993633 bp Feature: domain Description: PHA0251 7 Location: 2993228-2993633 bp Feature: gene Location: 2993683-2995005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2993938-2994631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2993938-2994631 bp Feature: domain Description: GIIM Note: maturase Location: 2994691-2994904 bp Feature: domain Description: GIIM Note: maturase Location: 2994691 -2994904 bp Feature: gene Location: 2995484-2995777 bp Feature: domain Description: HTH_Tnp_1 Location: 2995487-2995652 bp Feature: domain Description: HTH_Tnp_1 Location: 2995487-2995652 bp Feature: gene Location: 2996147-2997652 bp Feature: domain Description: COG4584 Location: 2996195-2996993 bp Feature: domain Description: COG4584 Location: 29961 95-2996993 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT lectin_legume_LecRK_Arcelin_ConA (cd06899), RVT-GII, GIIM (pfam08388), Big_5 (pfam13205), PKD (smart00089), PHA02517 (putative transposase OrfB; Reviewed), HTH_Tnp_1 (pfam01527), COG4584 (Transposase )

Seq: NIOI01000002.1 Pseudoclostridium thermosuccinogenes strain DSM 5809 scaffold2_size1143849_cov234.7525, whole genome shotgun sequence (1143849 bp)
Overview 1 RT 1: 254017-261074 bp 2 RT 2: 1122448-1129780 bp Neighborhood of RT #1 [254017, 261085] RVT-GII COG4584 IstB_IS21 RVT-GII GIIM PAF-AH_p_II DraG Neighborhood of RT #2 [1122448, 1129794] dnaG group_II_RT_mat RVT-UG6 nitrilase IS285 Feature: gene Location: 254017-254214 bp Feature: gene Location: 254399-254626 bp Feature: gene Location: 254636-255340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 254942-255332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 54942 -2 55332 bp Feature: gene Location: 255565-257070 bp Feature: domain Description: COG4584 Location: 255613-256411 bp Feature: domain Description: COG4584 Location: 2 55613-2 56411 bp Feature: gene Location: 257180-257788 bp Feature: domain Description: IstB_IS21 Location: 257216-257735 bp Feature: domain Description: IstB_IS2 1 Location: 2 572 16-2 57735 bp Feature: gene Location: 257827-258495 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 257878-258136 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 57878-2 58136 bp Feature: domain Description: GIIM Note: maturase Location: 258214-258430 bp Feature: domain Description: GIIM Note: maturase Location: 2 582 14-2 58430 bp Feature: gene Location: 258908-260002 bp Feature: domain Description: PAF-AH_p_II Location: 259235-259997 bp Feature: domain Description: PAF-AH_p_II Location: 2 592 35-2 59997 bp Feature: gene Location: 260651-261085 bp Feature: domain Description: DraG Location: 260672-261074 bp Feature: domain Description: DraG Location: 2 60672 -2 61074 bp Feature: gene Location: 1122448-1122612 bp Feature: gene Location: 1123032-1124060 bp Feature: domain Description: dnaG Location: 1123107-1124040 bp Feature: domain Description: dnaG Location: 112 3107-112 4040 bp Feature: gene Location: 1124063-1127398 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1124099-1124417 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 112 4099-112 4417 bp Feature: RT Description: RVT-UG6 Note: UG6 RT Location: 1124732-1125167 bp Feature: RT Description: RVT-UG6 Note: UG6 RT Location: 112 4732 -112 5167 bp Feature: gene Location: 1127395-1128306 bp Feature: domain Description: nitrilase Location: 1127629-1128166 bp Feature: domain Description: nitrilase Location: 112 762 9-112 8166 bp Feature: gene Location: 1128568-1129794 bp Feature: domain Description: IS285 Location: 1128625-1129780 bp Feature: domain Description: IS2 85 Location: 112 862 5-112 9780 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, COG4584 (Transposase ), IstB_IS21 (pfam01695), GIIM (pfam08388), PAF-AH_p_II (pfam03403), DraG (COG1397), dnaG (TIGR01391), group_II_RT_mat (TIGR04416), RVT-UG6, nitrilase (cl11424)
IS285 (COG3328)

Seq: NIOI01000005.1 Pseudoclostridium thermosuccinogenes strain DSM 5809 scaffold5_size33528_cov150.8288, whole genome shotgun sequence (33528 bp)
Overview 1 RT 1: 2260-6895 bp Neighborhood of RT #1 [2260, 6945] Acetyltransf_1 Acetyltransf_1 RVT-GII GIIM ARO8 Feature: gene Location: 2260-2412 bp Feature: gene Location: 2459-3310 bp Feature: domain Description: Acetyltransf_1 Location: 2594-2861 bp Feature: domain Description: Acetyltransf_1 Location: 2594-2861 bp Feature: domain Description: Acetyltransf_1 Location: 3008-3266 bp Feature: domain Description: Acetyltransf_1 Location: 3 008-3 266 bp Feature: gene Location: 3832-5130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4132-4771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 413 2-4771 bp Feature: domain Description: GIIM Note: maturase Location: 4849-5071 bp Feature: domain Description: GIIM Note: maturase Location: 4849-5071 bp Feature: gene Location: 5558-5695 bp Feature: gene Location: 5821-6945 bp Feature: domain Description: ARO8 Location: 5854-6895 bp Feature: domain Description: ARO8 Location: 5854-6895 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Acetyltransf_1 (pfam00583), RVT-GII, GIIM (pfam08388), ARO8 (COG1167)