myRT

myRT report for GCA_002897015.1_ASM289701v1

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Seq: NIOJ01000124.1 Pseudoclostridium thermosuccinogenes strain DSM 5806 NODE_124_length_2291_cov_319.364_ID_14885, whole genome shotgun sequence (2291 bp)
Overview 1 RT 1: 1-2094 bp Neighborhood of RT #1 [1, 2195] PHA02517 RVT-GII GIIM Feature: gene Location: 1-768 bp Feature: domain Description: PHA02517 Location: 115-769 bp Feature: domain Description: PHA0251 7 Location: 1 1 5-769 bp Feature: gene Location: 873-2195 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1128-1821 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 28-1 821 bp Feature: domain Description: GIIM Note: maturase Location: 1881-2094 bp Feature: domain Description: GIIM Note: maturase Location: 1 881 -2094 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: NIOJ01000168.1 Pseudoclostridium thermosuccinogenes strain DSM 5806 NODE_168_length_582_cov_73.6755_ID_14973, whole genome shotgun sequence (582 bp)
Overview 1 RT 1: 186-492 bp Neighborhood of RT #1 [186, 566] RVT-UG6 Feature: gene Location: 186-566 bp Feature: RT Description: RVT-UG6 Note: UG6 RT Location: 189-492 bp Feature: RT Description: RVT-UG6 Note: UG6 RT Location: 189-492 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG6

Seq: NIOJ01000006.1 Pseudoclostridium thermosuccinogenes strain DSM 5806 NODE_6_length_138388_cov_136.454_ID_14649, whole genome shotgun sequence (138388 bp)
Overview 1 RT 1: 5736-10238 bp Neighborhood of RT #1 [5736, 10249] RVT-GII GIIM PAF-AH_p_II DraG Feature: gene Location: 5736-5933 bp Feature: gene Location: 6118-6345 bp Feature: gene Location: 6355-7659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6661-7300 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6661-73 00 bp Feature: domain Description: GIIM Note: maturase Location: 7378-7594 bp Feature: domain Description: GIIM Note: maturase Location: 73 78-7594 bp Feature: gene Location: 8072-9166 bp Feature: domain Description: PAF-AH_p_II Location: 8399-9161 bp Feature: domain Description: PAF-AH_p_II Location: 83 99-9161 bp Feature: gene Location: 9815-10249 bp Feature: domain Description: DraG Location: 9836-10238 bp Feature: domain Description: DraG Location: 983 6-1023 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PAF-AH_p_II (pfam03403), DraG (COG1397)

Seq: NIOJ01000074.1 Pseudoclostridium thermosuccinogenes strain DSM 5806 NODE_74_length_11559_cov_123.15_ID_14785, whole genome shotgun sequence (11559 bp)
Overview 1 RT 1: 2-2148 bp Neighborhood of RT #1 [2, 2148] rve_3 RVT-GII Feature: gene Location: 2-130 bp Feature: domain Description: rve_3 Location: 5-83 bp Feature: domain Description: rve_3 Location: 5-83 bp Feature: gene Location: 552-836 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 555-762 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 555-762 bp Feature: gene Location: 1393-1575 bp Feature: gene Location: 1984-2148 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve_3 (pfam13683), RVT-GII

Seq: NIOJ01000092.1 Pseudoclostridium thermosuccinogenes strain DSM 5806 NODE_92_length_7695_cov_127.474_ID_14821, whole genome shotgun sequence (7695 bp)
Overview 1 RT 1: 4997-7692 bp Neighborhood of RT #1 [4997, 7692] HTH_Tnp_1 RVT-GII GIIM Feature: gene Location: 4997-5290 bp Feature: domain Description: HTH_Tnp_1 Location: 5000-5165 bp Feature: domain Description: HTH_Tnp_1 Location: 5 000-5 165 bp Feature: gene Location: 5640-6083 bp Feature: gene Location: 6279-7547 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6522-7146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65 22-7146 bp Feature: domain Description: GIIM Note: maturase Location: 7242-7458 bp Feature: domain Description: GIIM Note: maturase Location: 7242-745 8 bp Feature: gene Location: 7555-7692 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_1 (pfam01527), RVT-GII, GIIM (pfam08388)