myRT

myRT report for GCA_002897435.1_ASM289743v1

Download annotations/find similar RTs

Seq: BDEF01000039.1 Tetragenococcus halophilus subsp. halophilus DNA, contig: contig39, whole genome shotgun sequence (979 bp)
Overview 1 RT 1: 3-935 bp Neighborhood of RT #1 [3, 935] RVT-GII Feature: gene Location: 3-473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 204-471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 204-471 bp Feature: gene Location: 801-935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: BDEF01000057.1 Tetragenococcus halophilus subsp. halophilus DNA, contig: contig57, whole genome shotgun sequence (591 bp)
Overview 1 RT 1: 1-589 bp Neighborhood of RT #1 [1, 588] RVT-GII GIIM Feature: gene Location: 1-588 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-415 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-415 bp Feature: domain Description: GIIM Note: maturase Location: 472-589 bp Feature: domain Description: GIIM Note: maturase Location: 472 -589 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: BDEF01000127.1 Tetragenococcus halophilus subsp. halophilus DNA, contig: contig127, whole genome shotgun sequence (1811 bp)
Overview 1 RT 1: 436-1543 bp Neighborhood of RT #1 [436, 1734] RVT-GII GIIM Feature: gene Location: 436-1734 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 661-1276 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 661-1276 bp Feature: domain Description: GIIM Note: maturase Location: 1336-1543 bp Feature: domain Description: GIIM Note: maturase Location: 13 3 6-1543 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: BDEF01000148.1 Tetragenococcus halophilus subsp. halophilus DNA, contig: contig148, whole genome shotgun sequence (1055 bp)
Overview 1 RT 1: 94-1026 bp Neighborhood of RT #1 [94, 1052] GIIM RVT-GII Feature: gene Location: 94-450 bp Feature: domain Description: GIIM Note: maturase Location: 100-295 bp Feature: domain Description: GIIM Note: maturase Location: 100-295 bp Feature: gene Location: 504-1052 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 510-1026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 510-1026 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: BDEF01000162.1 Tetragenococcus halophilus subsp. halophilus DNA, contig: contig162, whole genome shotgun sequence (11776 bp)
Overview 1 RT 1: 7977-11772 bp Neighborhood of RT #1 [7977, 11774] RNase_R smpB RVT-GII Feature: gene Location: 7977-10295 bp Feature: domain Description: RNase_R Location: 7992-10128 bp Feature: domain Description: RNase_R Location: 7992-10128 bp Feature: gene Location: 10319-10777 bp Feature: domain Description: smpB Location: 10340-10769 bp Feature: domain Description: smpB Location: 10340-10769 bp Feature: gene Location: 11304-11774 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11505-11772 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 115 05 -11772 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT smpB (TIGR00086), RVT-GII, RNase_R (TIGR02063)

Seq: BDEF01000176.1 Tetragenococcus halophilus subsp. halophilus DNA, contig: contig176, whole genome shotgun sequence (729 bp)
Overview 1 RT 1: 146-726 bp Neighborhood of RT #1 [146, 728] RVT-GII Feature: gene Location: 146-346 bp Feature: gene Location: 417-728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 636-726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 36 -726 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: BDEF01000201.1 Tetragenococcus halophilus subsp. halophilus DNA, contig: contig201, whole genome shotgun sequence (7038 bp)
Overview 1 RT 1: 2-3271 bp Neighborhood of RT #1 [2, 3294] RVT-GII GIIM SnoaL_2 PRK09441 Feature: gene Location: 2-1180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83-701 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83-7 01 bp Feature: domain Description: GIIM Note: maturase Location: 758-965 bp Feature: domain Description: GIIM Note: maturase Location: 7 58-965 bp Feature: gene Location: 1349-1729 bp Feature: domain Description: SnoaL_2 Location: 1376-1685 bp Feature: domain Description: SnoaL_2 Location: 137 6-1685 bp Feature: gene Location: 1795-3294 bp Feature: domain Description: PRK09441 Location: 1834-3271 bp Feature: domain Description: PRK09441 Location: 1834-327 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SnoaL_2 (pfam12680), PRK09441 (cytoplasmic alpha-amylase; Reviewed), RVT-GII, GIIM (pfam08388)