myRT

myRT report for GCA_002897495.1_ASM289749v1

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Seq: BDDY01000056.1 Tetragenococcus halophilus subsp. halophilus DNA, contig: contig56, whole genome shotgun sequence (940 bp)
Overview 1 RT 1: 1-778 bp Neighborhood of RT #1 [1, 939] RVT-GII GIIM Feature: gene Location: 1-939 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-51 1 bp Feature: domain Description: GIIM Note: maturase Location: 571-778 bp Feature: domain Description: GIIM Note: maturase Location: 571 -778 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: BDDY01000071.1 Tetragenococcus halophilus subsp. halophilus DNA, contig: contig71, whole genome shotgun sequence (849 bp)
Overview 1 RT 1: 33-633 bp Neighborhood of RT #1 [33, 848] RVT-GII GIIM Feature: gene Location: 33-848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39-369 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39-369 bp Feature: domain Description: GIIM Note: maturase Location: 426-633 bp Feature: domain Description: GIIM Note: maturase Location: 42 6-633 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: BDDY01000108.1 Tetragenococcus halophilus subsp. halophilus DNA, contig: contig108, whole genome shotgun sequence (426 bp)
Overview 1 RT 1: 1-424 bp Neighborhood of RT #1 [1, 423] RVT-GII Feature: gene Location: 1-423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 178-424 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 178-424 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: BDDY01000129.1 Tetragenococcus halophilus subsp. halophilus DNA, contig: contig129, whole genome shotgun sequence (1872 bp)
Overview 1 RT 1: 2-1109 bp Neighborhood of RT #1 [2, 1270] RVT-GII GIIM Feature: gene Location: 2-1270 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 227-842 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 227-84 2 bp Feature: domain Description: GIIM Note: maturase Location: 902-1109 bp Feature: domain Description: GIIM Note: maturase Location: 902-1109 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: BDDY01000136.1 Tetragenococcus halophilus subsp. halophilus DNA, contig: contig136, whole genome shotgun sequence (226 bp)
Overview 1 RT 1: 2-218 bp Neighborhood of RT #1 [2, 223] RVT-GII Feature: gene Location: 2-223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44-218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44-218 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: BDDY01000140.1 Tetragenococcus halophilus subsp. halophilus DNA, contig: contig140, whole genome shotgun sequence (382 bp)
Overview 1 RT 1: 1-331 bp Neighborhood of RT #1 [1, 330] RVT-GII Feature: gene Location: 1-330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 202-331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 202-331 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: BDDY01000171.1 Tetragenococcus halophilus subsp. halophilus DNA, contig: contig171, whole genome shotgun sequence (1644 bp)
Overview 1 RT 1: 11-1397 bp Neighborhood of RT #1 [11, 1552] RVT-GII GIIM Feature: gene Location: 11-211 bp Feature: gene Location: 282-1142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 501-1116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 501-1116 bp Feature: gene Location: 1196-1552 bp Feature: domain Description: GIIM Note: maturase Location: 1202-1397 bp Feature: domain Description: GIIM Note: maturase Location: 1202-1397 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: BDDY01000175.1 Tetragenococcus halophilus subsp. halophilus DNA, contig: contig175, whole genome shotgun sequence (5617 bp)
Overview 1 RT 1: 2401-5401 bp Neighborhood of RT #1 [2401, 5616] YdaT PBP2_OppA RVT-GII GIIM Feature: gene Location: 2401-2853 bp Feature: domain Description: YdaT Location: 2404-2797 bp Feature: domain Description: YdaT Location: 2404-2797 bp Feature: gene Location: 3072-4715 bp Feature: domain Description: PBP2_OppA Location: 3180-4698 bp Feature: domain Description: PBP2_OppA Location: 318 0-4698 bp Feature: gene Location: 4801-5616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4807-5137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48 07-5137 bp Feature: domain Description: GIIM Note: maturase Location: 5194-5401 bp Feature: domain Description: GIIM Note: maturase Location: 5194-5401 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YdaT (COG4876), PBP2_OppA (cd08504), RVT-GII, GIIM (pfam08388)

Seq: BDDY01000190.1 Tetragenococcus halophilus subsp. halophilus DNA, contig: contig190, whole genome shotgun sequence (198 bp)
Overview 1 RT 1: 1-193 bp Neighborhood of RT #1 [1, 195] RVT-GII Feature: gene Location: 1-195 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-19 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: BDDY01000201.1 Tetragenococcus halophilus subsp. halophilus DNA, contig: contig201, whole genome shotgun sequence (306 bp)
Overview 1 RT 1: 1-304 bp Neighborhood of RT #1 [1, 303] RVT-GII Feature: gene Location: 1-303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 175-304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 175-304 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: BDDY01000219.1 Tetragenococcus halophilus subsp. halophilus DNA, contig: contig219, whole genome shotgun sequence (214 bp)
Overview 1 RT 1: 2-206 bp Neighborhood of RT #1 [2, 211] RVT-GII Feature: gene Location: 2-211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32-206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32-206 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: BDDY01000233.1 Tetragenococcus halophilus subsp. halophilus DNA, contig: contig233, whole genome shotgun sequence (188 bp)
Overview 1 RT 1: 3-177 bp Neighborhood of RT #1 [3, 185] RVT-GII Feature: gene Location: 3-185 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-177 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: BDDY01000242.1 Tetragenococcus halophilus subsp. halophilus DNA, contig: contig242, whole genome shotgun sequence (71770 bp)
Overview 1 RT 1: 3-4374 bp Neighborhood of RT #1 [3, 4541] RVT-GII GIIM smpB RNase_R Feature: gene Location: 3-1214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 204-822 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 204-822 bp Feature: domain Description: GIIM Note: maturase Location: 879-1086 bp Feature: domain Description: GIIM Note: maturase Location: 879-1086 bp Feature: gene Location: 1741-2199 bp Feature: domain Description: smpB Location: 1762-2191 bp Feature: domain Description: smpB Location: 1762-2191 bp Feature: gene Location: 2223-4541 bp Feature: domain Description: RNase_R Location: 2238-4374 bp Feature: domain Description: RNase_R Location: 2238-4374 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), smpB (TIGR00086), RNase_R (TIGR02063)