myRT

myRT report for GCA_002900095.1_ASM290009v1

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Seq: LLKN01000002.1 Salegentibacter mishustinae strain DSM 23404 Smish_2, whole genome shotgun sequence (2887939 bp)
Overview 1 RT 1: 1078068-1083065 bp 2 RT 2: 2831675-2835877 bp Neighborhood of RT #1 [1078068, 1083065] Y2_Tnp RVT-UG12 COG3547 Neighborhood of RT #2 [2831675, 2835909] DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM COG3436 TnpB_IS66 Feature: gene Location: 1078068-1078301 bp Feature: gene Location: 1078392-1079138 bp Feature: domain Description: Y2_Tnp Location: 1078443-1078950 bp Feature: domain Description: Y2_Tnp Location: 1 078443-1 078950 bp Feature: gene Location: 1079435-1081075 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 1079801-1080245 bp Feature: RT Description: RVT-UG1 2 Note: UG1 2 RT Location: 1 079801 -1 080245 bp Feature: gene Location: 1081745-1082800 bp Feature: domain Description: COG3547 Location: 1081925-1082756 bp Feature: domain Description: COG3547 Location: 1 081 925-1 082756 bp Feature: gene Location: 1082868-1083065 bp Feature: gene Location: 2831675-2832184 bp Feature: gene Location: 2832234-2832995 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2832243-2832849 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2832243-2832849 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2832870-2832978 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2832870-2832978 bp Feature: gene Location: 2833098-2834336 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2833311-2833965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 283331 1 -2833965 bp Feature: domain Description: GIIM Note: maturase Location: 2834043-2834262 bp Feature: domain Description: GIIM Note: maturase Location: 2834043-2834262 bp Feature: gene Location: 2834848-2835567 bp Feature: domain Description: COG3436 Location: 2835094-2835544 bp Feature: domain Description: COG3436 Location: 2835094-2835544 bp Feature: gene Location: 2835610-2835909 bp Feature: domain Description: TnpB_IS66 Location: 2835613-2835877 bp Feature: domain Description: TnpB_IS66 Location: 283561 3-2835877 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Y2_Tnp (pfam04986), RVT-UG12, COG3547 (Transposase ), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), COG3436 (Transposase ), TnpB_IS66 (pfam05717)