myRT

myRT report for GCA_002900945.1_ASM290094v1

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Seq: CYSS01000003.1 Janthinobacterium sp. CG23_2 genome assembly Janthinobacterium sp. CG23_2, scaffold Contig_scf7180000000011_quiver, whole genome shotgun sequence (4199787 bp)
Overview 1 RT 1: 161865-166277 bp 2 RT 2: 1041155-1046387 bp 3 RT 3: 1722331-1730190 bp 4 RT 4: 3618553-3624949 bp Neighborhood of RT #1 [161865, 166513] RVT-Retrons DUF2220 SbcCD_C Neighborhood of RT #2 [1041155, 1046387] MFS_FucP_MFSD4_like PurR RVT-Retrons Neighborhood of RT #3 [1722331, 1731059] OafA KOG4691 RVT-Retrons WGR_DNA_ligase HEAT_2 HEAT_2 Neighborhood of RT #4 [3618553, 3625008] DDE_Tnp_1_4 RVT-GII DUF1565 DUF1565 DUF1565 DUF1565 OafA Feature: gene Location: 161865-162287 bp Feature: gene Location: 162412-162600 bp Feature: gene Location: 163158-164756 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 163164-163785 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 631 64-1 63785 bp Feature: gene Location: 164958-166133 bp Feature: domain Description: DUF2220 Location: 165675-165945 bp Feature: domain Description: DUF2220 Location: 1 65675-1 65945 bp Feature: gene Location: 166133-166513 bp Feature: domain Description: SbcCD_C Location: 166136-166277 bp Feature: domain Description: SbcCD_C Location: 1 661 36-1 66277 bp Feature: gene Location: 1041155-1042531 bp Feature: domain Description: MFS_FucP_MFSD4_like Location: 1041335-1042505 bp Feature: domain Description: MFS_FucP_MFSD4_like Location: 1 041 335-1 042505 bp Feature: gene Location: 1042583-1043593 bp Feature: domain Description: PurR Location: 1042589-1043579 bp Feature: domain Description: PurR Location: 1 042589-1 043579 bp Feature: gene Location: 1043829-1045208 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1044288-1044927 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 044288-1 044927 bp Feature: gene Location: 1045258-1045830 bp Feature: gene Location: 1045827-1046387 bp Feature: gene Location: 1722331-1723320 bp Feature: domain Description: OafA Location: 1722373-1723264 bp Feature: domain Description: OafA Location: 1 722373-1 723264 bp Feature: gene Location: 1723333-1725240 bp Feature: domain Description: KOG4691 Location: 1723555-1723783 bp Feature: domain Description: KOG4691 Location: 1 723555-1 723783 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1723897-1724512 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 723897-1 72451 2 bp Feature: gene Location: 1725607-1727190 bp Feature: gene Location: 1727250-1731059 bp Feature: domain Description: WGR_DNA_ligase Location: 1728015-1728195 bp Feature: domain Description: WGR_DNA_ligase Location: 1 72801 5-1 7281 95 bp Feature: domain Description: HEAT_2 Location: 1728327-1728537 bp Feature: domain Description: HEAT_2 Location: 1 728327-1 728537 bp Feature: domain Description: HEAT_2 Location: 1729971-1730190 bp Feature: domain Description: HEAT_2 Location: 1 729971 -1 7301 90 bp Feature: gene Location: 3618553-3619863 bp Feature: domain Description: DDE_Tnp_1_4 Location: 3618595-3619855 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 361 8595-361 9855 bp Feature: gene Location: 3619890-3620132 bp Feature: gene Location: 3620166-3620912 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3620307-3620871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3620307-3620871 bp Feature: gene Location: 3621400-3623694 bp Feature: domain Description: DUF1565 Location: 3621529-3621640 bp Feature: domain Description: DUF1 565 Location: 3621 529-3621 640 bp Feature: domain Description: DUF1565 Location: 3622033-3622336 bp Feature: domain Description: DUF1 565 Location: 3622033-3622336 bp Feature: domain Description: DUF1565 Location: 3622681-3622792 bp Feature: domain Description: DUF1 565 Location: 3622681 -3622792 bp Feature: domain Description: DUF1565 Location: 3623209-3623578 bp Feature: domain Description: DUF1 565 Location: 3623209-3623578 bp Feature: gene Location: 3623812-3625008 bp Feature: domain Description: OafA Location: 3623893-3624949 bp Feature: domain Description: OafA Location: 3623893-3624949 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF2220 (pfam09983), SbcCD_C (pfam13558), MFS_FucP_MFSD4_like (cd17333), PurR (COG1609), OafA (COG1835), KOG4691 (KOG4691, Uncharacterized conserved protein ), WGR_DNA_ligase (cd07998), HEAT_2 (pfam13646), DDE_Tnp_1_4 (pfam13701)
RVT-GII, DUF1565 (pfam07602)