myRT

myRT report for GCA_002901125.1_ASM290112v1

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Seq: NOWD01000033.1 Vibrio anguillarum strain M93 Contig_33, whole genome shotgun sequence (177160 bp)
Overview 1 RT 1: 165524-171043 bp Neighborhood of RT #1 [165524, 171054] YegP RVT_N RVT-GII GIIM HNHc groEL Feature: gene Location: 165524-166093 bp Feature: gene Location: 166386-166538 bp Feature: domain Description: YegP Location: 166389-166506 bp Feature: domain Description: YegP Location: 1 66389-1 66506 bp Feature: gene Location: 166645-168324 bp Feature: RT Description: RVT_N Location: 166717-166957 bp Feature: RT Description: RVT_N Location: 1 6671 7-1 66957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 167005-167650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 67005-1 67650 bp Feature: domain Description: GIIM Note: maturase Location: 167701-167935 bp Feature: domain Description: GIIM Note: maturase Location: 1 67701 -1 67935 bp Feature: domain Description: HNHc Note: nucleases Location: 168151-168313 bp Feature: domain Description: HNHc Note: nucleases Location: 1 681 51 -1 6831 3 bp Feature: gene Location: 168608-168757 bp Feature: gene Location: 169420-171054 bp Feature: domain Description: groEL Location: 169426-171043 bp Feature: domain Description: groEL Location: 1 69426-1 71 043 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YegP (COG3422), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), groEL (PRK12852)

Seq: NOWD01000041.1 Vibrio anguillarum strain M93 Contig_41, whole genome shotgun sequence (2169 bp)
Overview 1 RT 1: 214-1834 bp Neighborhood of RT #1 [214, 2058] RVT_N RVT-GII GIIM Feature: gene Location: 214-345 bp Feature: gene Location: 586-2058 bp Feature: RT Description: RVT_N Location: 634-877 bp Feature: RT Description: RVT_N Location: 634-877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 922-1549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92 2 -1549 bp Feature: domain Description: GIIM Note: maturase Location: 1606-1834 bp Feature: domain Description: GIIM Note: maturase Location: 1606-1834 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: NOWD01000093.1 Vibrio anguillarum strain M93 Contig_93, whole genome shotgun sequence (221005 bp)
Overview 1 RT 1: 178570-185489 bp Neighborhood of RT #1 [178570, 185500] CeuD PRK12440 RVT_N RVT-GII GIIM PRK10216 PRK10473 Feature: gene Location: 178570-179331 bp Feature: domain Description: CeuD Location: 178573-179323 bp Feature: domain Description: CeuD Location: 178573 -1793 23 bp Feature: gene Location: 179661-180854 bp Feature: domain Description: PRK12440 Location: 179664-180852 bp Feature: domain Description: PRK12440 Location: 179664-180852 bp Feature: gene Location: 181142-182614 bp Feature: RT Description: RVT_N Location: 181190-181433 bp Feature: RT Description: RVT_N Location: 181190-18143 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 181478-182105 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 181478-182105 bp Feature: domain Description: GIIM Note: maturase Location: 182168-182390 bp Feature: domain Description: GIIM Note: maturase Location: 182168-1823 90 bp Feature: gene Location: 183316-184272 bp Feature: domain Description: PRK10216 Location: 183319-184264 bp Feature: domain Description: PRK10216 Location: 183 3 19-184264 bp Feature: gene Location: 184247-185500 bp Feature: domain Description: PRK10473 Location: 184316-185489 bp Feature: domain Description: PRK10473 Location: 1843 16-185489 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CeuD (COG4604), PRK12440 (acetate/propionate family kinase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PRK10216 (HTH-type transcriptional regulator YidZ), PRK10473 (MdtL family multidrug efflux MFS transporter)