myRT

myRT report for GCA_002901295.1_ASM290129v1

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Seq: PPHM01000049.1 Escherichia coli strain REP215 NODE_105_length_985_cov_233.224, whole genome shotgun sequence (985 bp)
Overview 1 RT 1: 3-982 bp Neighborhood of RT #1 [3, 982] RVT-GII Feature: gene Location: 3-329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276-330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276-330 bp Feature: gene Location: 623-982 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PPHM01000127.1 Escherichia coli strain REP215 NODE_27_length_86763_cov_25.8263, whole genome shotgun sequence (86763 bp)
Overview 1 RT 1: 34933-38815 bp Neighborhood of RT #1 [34933, 38820] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 34933-35649 bp Feature: domain Description: rph Location: 34936-35644 bp Feature: domain Description: rph Location: 34936-35644 bp Feature: gene Location: 35700-36356 bp Feature: domain Description: pyrE Location: 35718-36351 bp Feature: domain Description: pyrE Location: 35718-36351 bp Feature: gene Location: 36654-37613 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 36789-37338 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 36789-37338 bp Feature: gene Location: 37659-38255 bp Feature: domain Description: slmA Location: 37665-38241 bp Feature: domain Description: slmA Location: 37665-382 41 bp Feature: gene Location: 38362-38820 bp Feature: domain Description: dut Location: 38368-38815 bp Feature: domain Description: dut Location: 38368-38815 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: PPHM01000094.1 Escherichia coli strain REP215 NODE_60_length_12748_cov_32.3571, whole genome shotgun sequence (12748 bp)
Overview 1 RT 1: 3-1077 bp Neighborhood of RT #1 [3, 1085] RVT-GII PRK10173 PRK10173 Feature: gene Location: 3-302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72-144 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72-144 bp Feature: gene Location: 341-652 bp Feature: domain Description: PRK10173 Location: 344-563 bp Feature: domain Description: PRK10173 Location: 3 44-563 bp Feature: gene Location: 636-1085 bp Feature: domain Description: PRK10173 Location: 639-1077 bp Feature: domain Description: PRK10173 Location: 63 9-1077 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional)

Seq: PPHM01000146.1 Escherichia coli strain REP215 NODE_8_length_192436_cov_23.3779, whole genome shotgun sequence (192436 bp)
Overview 1 RT 1: 3-3758 bp Neighborhood of RT #1 [3, 3766] RVT-GII GIIM PHA02517 HsdM Feature: gene Location: 3-1322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72-804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72-804 bp Feature: domain Description: GIIM Note: maturase Location: 879-1077 bp Feature: domain Description: GIIM Note: maturase Location: 879-1077 bp Feature: gene Location: 1451-1891 bp Feature: domain Description: PHA02517 Location: 1454-1856 bp Feature: domain Description: PHA02517 Location: 14 54 -1856 bp Feature: gene Location: 2243-3766 bp Feature: domain Description: HsdM Location: 2264-3758 bp Feature: domain Description: HsdM Location: 2264 -3758 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), HsdM (COG0286), RVT-GII, GIIM (pfam08388)