myRT

myRT report for GCA_002901325.1_ASM290132v1

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Seq: PPHQ01000014.1 Escherichia coli strain B8S18Com, whole genome shotgun sequence (155412 bp)
Overview 1 RT 1: 39841-43719 bp Neighborhood of RT #1 [39841, 43724] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 39841-40557 bp Feature: domain Description: rph Location: 39844-40552 bp Feature: domain Description: rph Location: 39844-40552 bp Feature: gene Location: 40608-41264 bp Feature: domain Description: pyrE Location: 40626-41259 bp Feature: domain Description: pyrE Location: 40626-41 259 bp Feature: gene Location: 41561-42520 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41696-42245 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41 696-42245 bp Feature: gene Location: 42564-43160 bp Feature: domain Description: slmA Location: 42570-43146 bp Feature: domain Description: slmA Location: 42570-431 46 bp Feature: gene Location: 43266-43724 bp Feature: domain Description: dut Location: 43272-43719 bp Feature: domain Description: dut Location: 43272-4371 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: PPHQ01000002.1 Escherichia coli strain B8S18Com, whole genome shotgun sequence (374158 bp)
Overview 1 RT 1: 14590-20822 bp Neighborhood of RT #1 [14590, 20959] Phage_integrase RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 14590-14844 bp Feature: domain Description: Phage_integrase Location: 14656-14752 bp Feature: domain Description: Phage_integrase Location: 14656-14752 bp Feature: gene Location: 14927-15397 bp Feature: gene Location: 15744-18953 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 16272-16761 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 162 72 -16761 bp Feature: domain Description: nitrilase Location: 18267-18864 bp Feature: domain Description: nitrilase Location: 182 67-18864 bp Feature: gene Location: 19270-20052 bp Feature: domain Description: AbiEi_3_N Location: 19276-19543 bp Feature: domain Description: AbiEi_3_N Location: 192 76-19543 bp Feature: domain Description: AbiEi_3 Location: 19555-20011 bp Feature: domain Description: AbiEi_3 Location: 19555-2 0011 bp Feature: gene Location: 20039-20959 bp Feature: domain Description: AbiEii Location: 20081-20822 bp Feature: domain Description: AbiEii Location: 2 0081-2 082 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: PPHQ01000052.1 Escherichia coli strain B8S18Com, whole genome shotgun sequence (8244 bp)
Overview 1 RT 1: 5116-8243 bp Neighborhood of RT #1 [5116, 8242] InsE PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 5116-5415 bp Feature: domain Description: InsE Location: 5146-5407 bp Feature: domain Description: InsE Location: 5146-5407 bp Feature: gene Location: 5412-5879 bp Feature: domain Description: PHA02517 Location: 5478-5817 bp Feature: domain Description: PHA02517 Location: 5478-5817 bp Feature: gene Location: 6471-7712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6744-7476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6744-7476 bp Feature: domain Description: GIIM Note: maturase Location: 7551-7707 bp Feature: domain Description: GIIM Note: maturase Location: 7551-7707 bp Feature: gene Location: 7764-7994 bp Feature: gene Location: 8105-8242 bp Feature: domain Description: PHA02517 Location: 8108-8243 bp Feature: domain Description: PHA02517 Location: 8108-8243 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: PPHQ01000058.1 Escherichia coli strain B8S18Com, whole genome shotgun sequence (7501 bp)
Overview 1 RT 1: 3-1531 bp Neighborhood of RT #1 [3, 1605] InsE RVT-GII RVT-GII group_II_RT_mat IS285 Feature: gene Location: 3-263 bp Feature: domain Description: InsE Location: 6-264 bp Feature: domain Description: InsE Location: 6-264 bp Feature: gene Location: 302-505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 347-503 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34 7-503 bp Feature: gene Location: 539-775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 542-722 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54 2-722 bp Feature: gene Location: 768-980 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 771-969 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 771-969 bp Feature: gene Location: 1123-1605 bp Feature: domain Description: IS285 Location: 1153-1531 bp Feature: domain Description: IS285 Location: 1153-1531 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, group_II_RT_mat (TIGR04416), IS285 (COG3328)