myRT

myRT report for GCA_002903605.1_ASM290360v1

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Seq: PDGL01000038.1 Vibrio vulnificus strain 960426-1_4C NODE_4_length_229152_cov_2.11021_ID_20456, whole genome shotgun sequence (229152 bp)
Overview 1 RT 1: 131351-140175 bp Neighborhood of RT #1 [131351, 140207] PRK05912 OapA_N PRK11649 RVT-GII GIIM AcrB RND_mfp Feature: gene Location: 131351-132538 bp Feature: domain Description: PRK05912 Location: 131363-132530 bp Feature: domain Description: PRK0591 2 Location: 1 31 363-1 32530 bp Feature: gene Location: 132666-133958 bp Feature: domain Description: OapA_N Location: 132678-132762 bp Feature: domain Description: OapA_N Location: 1 32678-1 32762 bp Feature: domain Description: PRK11649 Location: 132882-133926 bp Feature: domain Description: PRK1 1 649 Location: 1 32882-1 33926 bp Feature: gene Location: 134013-135326 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 134232-134841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 34232-1 34841 bp Feature: domain Description: GIIM Note: maturase Location: 134898-135102 bp Feature: domain Description: GIIM Note: maturase Location: 1 34898-1 351 02 bp Feature: gene Location: 135920-139102 bp Feature: domain Description: AcrB Location: 135935-138983 bp Feature: domain Description: AcrB Location: 1 35935-1 38983 bp Feature: gene Location: 139113-140207 bp Feature: domain Description: RND_mfp Location: 139296-140175 bp Feature: domain Description: RND_mfp Location: 1 39296-1 401 75 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05912 (tyrosyl-tRNA synthetase; Validated), OapA_N (pfam08525), PRK11649 (putative peptidase; Provisional), RVT-GII, GIIM (pfam08388), AcrB (COG0841), RND_mfp (TIGR01730)

Seq: PDGL01000023.1 Vibrio vulnificus strain 960426-1_4C NODE_51_length_7696_cov_2.50902_ID_20568, whole genome shotgun sequence (7696 bp)
Overview 1 RT 1: 3677-5855 bp Neighborhood of RT #1 [3677, 5855] arc_metj ParE RVT-Retrons HTH_XRE Feature: gene Location: 3677-3961 bp Feature: domain Description: arc_metj Location: 3689-3806 bp Feature: domain Description: arc_metj Location: 3689-3806 bp Feature: gene Location: 3958-4236 bp Feature: domain Description: ParE Location: 3964-4231 bp Feature: domain Description: ParE Location: 3964-42 31 bp Feature: gene Location: 4384-5343 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4546-5038 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4546-5038 bp Feature: gene Location: 5340-5627 bp Feature: domain Description: HTH_XRE Location: 5358-5526 bp Feature: domain Description: HTH_XRE Location: 5358-552 6 bp Feature: gene Location: 5670-5855 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT arc_metj (LOAD_arc_metj), ParE (COG3668), RVT-Retrons, HTH_XRE (smart00530)

Seq: PDGL01000204.1 Vibrio vulnificus strain 960426-1_4C NODE_64_length_5309_cov_2.24511_ID_20596, whole genome shotgun sequence (5309 bp)
Overview 1 RT 1: 2847-4303 bp Neighborhood of RT #1 [2847, 5121] DUF3265 RVT-UG12 Feature: gene Location: 2847-3017 bp Feature: domain Description: DUF3265 Location: 2916-2997 bp Feature: domain Description: DUF3 265 Location: 2916-2997 bp Feature: gene Location: 3038-3256 bp Feature: gene Location: 3511-5121 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 3868-4303 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 3 868-43 03 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3265 (pfam11665), RVT-UG12

Seq: PDGL01000070.1 Vibrio vulnificus strain 960426-1_4C NODE_98_length_2092_cov_16.2007_ID_20680, whole genome shotgun sequence (2092 bp)
Overview 1 RT 1: 72-2090 bp Neighborhood of RT #1 [72, 2090] RVT-GII GIIM Feature: gene Location: 72-1355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 285-906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 285-906 bp Feature: domain Description: GIIM Note: maturase Location: 957-1176 bp Feature: domain Description: GIIM Note: maturase Location: 957-1176 bp Feature: gene Location: 1591-1746 bp Feature: gene Location: 1758-2090 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)