myRT

myRT report for GCA_002906725.1_ASM290672v1

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Seq: PJJB01000021.1 Dickeya dianthicola strain DE440 Dickeya440_contig_21, whole genome shotgun sequence (200088 bp)
Overview 1 RT 1: 173380-177473 bp Neighborhood of RT #1 [173380, 177493] COG4737 YiaG RVT-Retrons Gp49 Feature: gene Location: 173380-173664 bp Feature: domain Description: COG4737 Location: 173383-173656 bp Feature: domain Description: COG4737 Location: 1 73383-1 73656 bp Feature: gene Location: 173715-174038 bp Feature: domain Description: YiaG Location: 173730-174033 bp Feature: domain Description: YiaG Location: 1 73730-1 74033 bp Feature: gene Location: 174325-176052 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 174463-175090 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 74463-1 75090 bp Feature: gene Location: 176253-176450 bp Feature: gene Location: 177173-177493 bp Feature: domain Description: Gp49 Location: 177212-177473 bp Feature: domain Description: Gp49 Location: 1 7721 2-1 77473 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4737 (Uncharacterized protein ), YiaG (COG2944), RVT-Retrons, Gp49 (pfam05973)

Seq: PJJB01000007.1 Dickeya dianthicola strain DE440 Dickeya440_contig_7, whole genome shotgun sequence (541313 bp)
Overview 1 RT 1: 29285-33867 bp Neighborhood of RT #1 [29285, 33875] PRK09010 RVT-GII Intron_maturas2 HNHc DUF29 Feature: gene Location: 29285-29512 bp Feature: gene Location: 29591-30073 bp Feature: domain Description: PRK09010 Location: 29594-30071 bp Feature: domain Description: PRK09010 Location: 2 9594-30071 bp Feature: gene Location: 30775-32568 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30976-31813 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30976-31813 bp Feature: domain Description: Intron_maturas2 Location: 31924-32203 bp Feature: domain Description: Intron_maturas2 Location: 3192 4-32 2 03 bp Feature: domain Description: HNHc Note: nucleases Location: 32344-32521 bp Feature: domain Description: HNHc Note: nucleases Location: 32 344-32 52 1 bp Feature: gene Location: 32585-33304 bp Feature: gene Location: 33444-33875 bp Feature: domain Description: DUF29 Location: 33459-33867 bp Feature: domain Description: DUF2 9 Location: 33459-33867 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09010 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF29 (pfam01724)