myRT

myRT report for GCA_002906735.1_ASM290673v1

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Seq: PJJC01000010.1 Dickeya dianthicola strain WV516 Dickeya516_contig_10, whole genome shotgun sequence (219998 bp)
Overview 1 RT 1: 43781-47886 bp Neighborhood of RT #1 [43781, 47894] Gp49 RVT-Retrons YiaG COG4737 Feature: gene Location: 43781-44101 bp Feature: domain Description: Gp49 Location: 43820-44081 bp Feature: domain Description: Gp49 Location: 43820-44081 bp Feature: gene Location: 44824-45021 bp Feature: gene Location: 45222-46949 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45360-45987 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45360-45987 bp Feature: gene Location: 47236-47559 bp Feature: domain Description: YiaG Location: 47251-47554 bp Feature: domain Description: YiaG Location: 47251 -47554 bp Feature: gene Location: 47610-47894 bp Feature: domain Description: COG4737 Location: 47613-47886 bp Feature: domain Description: COG4737 Location: 4761 3-47886 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gp49 (pfam05973), RVT-Retrons, YiaG (COG2944), COG4737 (Uncharacterized protein )

Seq: PJJC01000076.1 Dickeya dianthicola strain WV516 Dickeya516_contig_118, whole genome shotgun sequence (872 bp)
Overview 1 RT 1: 2-704 bp Neighborhood of RT #1 [2, 871] RVT-UG11 Feature: gene Location: 2-871 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 458-704 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 458-704 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11

Seq: PJJC01000083.1 Dickeya dianthicola strain WV516 Dickeya516_contig_130, whole genome shotgun sequence (1185 bp)
Overview 1 RT 1: 3-1180 bp Neighborhood of RT #1 [3, 1182] RVT-UNC RT_RNaseH_2 Feature: gene Location: 3-305 bp Feature: gene Location: 417-905 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 642-768 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 642-768 bp Feature: gene Location: 961-1182 bp Feature: domain Description: RT_RNaseH_2 Location: 988-1180 bp Feature: domain Description: RT_RNaseH_2 Location: 988-1180 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR/RVT-UG7/RVT-DGRs/RVT-UG23(RVT-UNC), RT_RNaseH_2 (pfam17919)

Seq: PJJC01000014.1 Dickeya dianthicola strain WV516 Dickeya516_contig_15, whole genome shotgun sequence (168755 bp)
Overview 1 RT 1: 29705-34287 bp Neighborhood of RT #1 [29705, 34295] PRK09010 RVT-GII Intron_maturas2 HNHc DUF29 Feature: gene Location: 29705-29932 bp Feature: gene Location: 30011-30493 bp Feature: domain Description: PRK09010 Location: 30014-30491 bp Feature: domain Description: PRK09010 Location: 30014 -304 91 bp Feature: gene Location: 31195-32988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31396-32233 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31396-32233 bp Feature: domain Description: Intron_maturas2 Location: 32344-32623 bp Feature: domain Description: Intron_maturas2 Location: 3234 4 -32623 bp Feature: domain Description: HNHc Note: nucleases Location: 32764-32941 bp Feature: domain Description: HNHc Note: nucleases Location: 32764 -3294 1 bp Feature: gene Location: 33005-33724 bp Feature: gene Location: 33864-34295 bp Feature: domain Description: DUF29 Location: 33879-34287 bp Feature: domain Description: DUF29 Location: 33879-34 287 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09010 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF29 (pfam01724)