myRT

myRT report for GCA_002906755.1_ASM290675v1

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Seq: MINE01000015.1 Pseudomonas putida strain KT-90 scaffold1_cov64, whole genome shotgun sequence (4688999 bp)
Overview 1 RT 1: 2933269-2938191 bp 2 RT 2: 3429513-3436601 bp 3 RT 3: 3451380-3457805 bp Neighborhood of RT #1 [2933269, 2938193] LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C Transposase_20 RVT-GII GIIM PRK06213 Neighborhood of RT #2 [3429513, 3436606] PRK05826 RVT_N RVT-GII GIIM HNHc groEL groES Neighborhood of RT #3 [3451380, 3457822] secA DciA RVT-GII GIIM LpxC Feature: gene Location: 2933269-2934804 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2933410-2933623 bp Feature: domain Description: LZ_Tnp_IS66 Location: 293341 0-2933623 bp Feature: domain Description: zf-IS66 Location: 2933644-2933770 bp Feature: domain Description: zf-IS66 Location: 2933644-2933770 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2933812-2934655 bp Feature: domain Description: DDE_Tnp_IS66 Location: 293381 2-2934655 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2934676-2934787 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2934676-2934787 bp Feature: gene Location: 2934879-2935433 bp Feature: domain Description: Transposase_20 Location: 2935050-2935293 bp Feature: domain Description: Transposase_20 Location: 2935050-2935293 bp Feature: gene Location: 2935672-2936844 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2935780-2936395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2935780-2936395 bp Feature: domain Description: GIIM Note: maturase Location: 2936449-2936677 bp Feature: domain Description: GIIM Note: maturase Location: 2936449-2936677 bp Feature: gene Location: 2936892-2937062 bp Feature: gene Location: 2937504-2938193 bp Feature: domain Description: PRK06213 Location: 2937507-2938191 bp Feature: domain Description: PRK0621 3 Location: 2937507-29381 91 bp Feature: gene Location: 3429513-3429899 bp Feature: gene Location: 3430080-3431534 bp Feature: domain Description: PRK05826 Location: 3430089-3431484 bp Feature: domain Description: PRK05826 Location: 3430089-3431 484 bp Feature: gene Location: 3431735-3433426 bp Feature: RT Description: RVT_N Location: 3431789-3432029 bp Feature: RT Description: RVT_N Location: 3431 789-3432029 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3432077-3432722 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3432077-3432722 bp Feature: domain Description: GIIM Note: maturase Location: 3432773-3433007 bp Feature: domain Description: GIIM Note: maturase Location: 3432773-3433007 bp Feature: domain Description: HNHc Note: nucleases Location: 3433226-3433379 bp Feature: domain Description: HNHc Note: nucleases Location: 3433226-3433379 bp Feature: gene Location: 3434623-3436263 bp Feature: domain Description: groEL Location: 3434629-3436246 bp Feature: domain Description: groEL Location: 3434629-3436246 bp Feature: gene Location: 3436313-3436606 bp Feature: domain Description: groES Location: 3436316-3436601 bp Feature: domain Description: groES Location: 343631 6-3436601 bp Feature: gene Location: 3451380-3454199 bp Feature: domain Description: secA Location: 3451467-3454197 bp Feature: domain Description: secA Location: 3451 467-34541 97 bp Feature: gene Location: 3454314-3454946 bp Feature: domain Description: DciA Location: 3454524-3454773 bp Feature: domain Description: DciA Location: 3454524-3454773 bp Feature: gene Location: 3455009-3456430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3455366-3455981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3455366-3455981 bp Feature: domain Description: GIIM Note: maturase Location: 3456038-3456263 bp Feature: domain Description: GIIM Note: maturase Location: 3456038-3456263 bp Feature: gene Location: 3456565-3456750 bp Feature: gene Location: 3456911-3457822 bp Feature: domain Description: LpxC Location: 3456914-3457805 bp Feature: domain Description: LpxC Location: 345691 4-3457805 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), Transposase_20 (pfam02371), RVT-GII, GIIM (pfam08388), PRK06213 (crotonase/enoyl-CoA hydratase family protein), PRK05826 (pyruvate kinase; Provisional), RVT_N (pfam13655)
HNHc (smart00507), groEL (PRK12852), groES (PRK14533), secA (TIGR00963), DciA, LpxC (pfam03331)

Seq: MINE01000016.1 Pseudomonas putida strain KT-90 scaffold20_cov64, whole genome shotgun sequence (1298884 bp)
Overview 1 RT 1: 670680-677787 bp Neighborhood of RT #1 [670680, 677903] HyuA Hydantoinase_B RVT-GII GIIM Porin_O_P Feature: gene Location: 670680-672770 bp Feature: domain Description: HyuA Location: 670695-672750 bp Feature: domain Description: HyuA Location: 670695-672 750 bp Feature: gene Location: 672806-674551 bp Feature: domain Description: Hydantoinase_B Location: 672821-674405 bp Feature: domain Description: Hydantoinase_B Location: 672 82 1-674405 bp Feature: gene Location: 674852-676129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 675113-675728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 675113-67572 8 bp Feature: domain Description: GIIM Note: maturase Location: 675782-676010 bp Feature: domain Description: GIIM Note: maturase Location: 675782 -676010 bp Feature: gene Location: 676065-676544 bp Feature: gene Location: 676725-677903 bp Feature: domain Description: Porin_O_P Location: 676950-677787 bp Feature: domain Description: Porin_O_P Location: 676950-677787 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HyuA (COG0145), Hydantoinase_B (pfam02538), RVT-GII, GIIM (pfam08388), Porin_O_P (pfam07396)

Seq: MINE01000064.1 Pseudomonas putida strain KT-90 scaffold484_cov369, whole genome shotgun sequence (1151 bp)
Overview 1 RT 1: 1-961 bp Neighborhood of RT #1 [1, 1143] RVT-GII GIIM Feature: gene Location: 1-1143 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76-691 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76-691 bp Feature: domain Description: GIIM Note: maturase Location: 748-961 bp Feature: domain Description: GIIM Note: maturase Location: 748-961 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MINE01000071.1 Pseudomonas putida strain KT-90 scaffold514_cov183, whole genome shotgun sequence (1843 bp)
Overview 1 RT 1: 58-1432 bp Neighborhood of RT #1 [58, 1824] RVT-GII Feature: gene Location: 58-1824 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 742-1432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74 2-14 32 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII