myRT

myRT report for GCA_002906815.1_ASM290681v1

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Seq: MING01000019.1 Pseudomonas putida strain KH-18-2 scaffold1_cov67, whole genome shotgun sequence (1905553 bp)
Overview 1 RT 1: 141064-145572 bp 2 RT 2: 1503650-1506925 bp 3 RT 3: 1697763-1704772 bp Neighborhood of RT #1 [141064, 145572] VI_Rhs_Vgr RVT-GII Neighborhood of RT #2 [1503650, 1506925] DUF1566 Avd_like RVT-DGRs Neighborhood of RT #3 [1697763, 1704777] PRK05826 RVT_N RVT-GII GIIM HNHc groEL groES Feature: gene Location: 141064-143091 bp Feature: domain Description: VI_Rhs_Vgr Location: 141307-142840 bp Feature: domain Description: VI_Rhs_Vgr Location: 1 41 307-1 42840 bp Feature: gene Location: 143581-144279 bp Feature: gene Location: 144351-144851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 144480-144687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 44480-1 44687 bp Feature: gene Location: 145076-145252 bp Feature: gene Location: 145261-145572 bp Feature: gene Location: 1503650-1504222 bp Feature: domain Description: DUF1566 Location: 1503980-1504208 bp Feature: domain Description: DUF1 566 Location: 1 503980-1 504208 bp Feature: gene Location: 1504275-1504628 bp Feature: domain Description: Avd_like Location: 1504302-1504608 bp Feature: domain Description: Avd_like Location: 1 504302-1 504608 bp Feature: gene Location: 1504827-1505984 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1505076-1505760 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 505076-1 505760 bp Feature: gene Location: 1506066-1506671 bp Feature: gene Location: 1506668-1506925 bp Feature: gene Location: 1697763-1698149 bp Feature: gene Location: 1698330-1699784 bp Feature: domain Description: PRK05826 Location: 1698339-1699734 bp Feature: domain Description: PRK05826 Location: 1 698339-1 699734 bp Feature: gene Location: 1700067-1701758 bp Feature: RT Description: RVT_N Location: 1700121-1700361 bp Feature: RT Description: RVT_N Location: 1 7001 21 -1 700361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1700409-1701054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 700409-1 701 054 bp Feature: domain Description: GIIM Note: maturase Location: 1701105-1701339 bp Feature: domain Description: GIIM Note: maturase Location: 1 701 1 05-1 701 339 bp Feature: domain Description: HNHc Note: nucleases Location: 1701558-1701711 bp Feature: domain Description: HNHc Note: nucleases Location: 1 701 558-1 701 71 1 bp Feature: gene Location: 1702793-1704433 bp Feature: domain Description: groEL Location: 1702799-1704416 bp Feature: domain Description: groEL Location: 1 702799-1 70441 6 bp Feature: gene Location: 1704484-1704777 bp Feature: domain Description: groES Location: 1704487-1704772 bp Feature: domain Description: groES Location: 1 704487-1 704772 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VI_Rhs_Vgr (TIGR03361), RVT-GII, DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs, PRK05826 (pyruvate kinase; Provisional), RVT_N (pfam13655), GIIM (pfam08388), HNHc (smart00507), groEL (PRK12852)
groES (PRK14533)

Seq: MING01000055.1 Pseudomonas putida strain KH-18-2 scaffold467_cov226, whole genome shotgun sequence (1106 bp)
Overview 1 RT 1: 2-908 bp Neighborhood of RT #1 [2, 1075] RVT-GII GIIM Feature: gene Location: 2-1075 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11-626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11-62 6 bp Feature: domain Description: GIIM Note: maturase Location: 680-908 bp Feature: domain Description: GIIM Note: maturase Location: 680-908 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MING01000057.1 Pseudomonas putida strain KH-18-2 scaffold477_cov522, whole genome shotgun sequence (1833 bp)
Overview 1 RT 1: 478-1624 bp Neighborhood of RT #1 [478, 1803] RVT-GII GIIM Feature: gene Location: 478-1803 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 739-1354 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73 9-13 54 bp Feature: domain Description: GIIM Note: maturase Location: 1408-1624 bp Feature: domain Description: GIIM Note: maturase Location: 1408-1624 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MING01000066.1 Pseudomonas putida strain KH-18-2 scaffold524_cov160, whole genome shotgun sequence (1105 bp)
Overview 1 RT 1: 31-937 bp Neighborhood of RT #1 [31, 1104] RVT-GII GIIM Feature: gene Location: 31-1104 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40-655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 0-655 bp Feature: domain Description: GIIM Note: maturase Location: 712-937 bp Feature: domain Description: GIIM Note: maturase Location: 712-937 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MING01000078.1 Pseudomonas putida strain KH-18-2 scaffold56_cov80, whole genome shotgun sequence (1136 bp)
Overview 1 RT 1: 2-952 bp Neighborhood of RT #1 [2, 952] RVT-GII Feature: gene Location: 2-706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 215-707 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 215 -707 bp Feature: gene Location: 716-952 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: MING01000080.1 Pseudomonas putida strain KH-18-2 scaffold576_cov168, whole genome shotgun sequence (605 bp)
Overview 1 RT 1: 1-598 bp Neighborhood of RT #1 [1, 603] RVT-GII Feature: gene Location: 1-603 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52-598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52-598 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: MING01000083.1 Pseudomonas putida strain KH-18-2 scaffold5_cov68, whole genome shotgun sequence (2791806 bp)
Overview 1 RT 1: 907483-912614 bp 2 RT 2: 925927-935243 bp Neighborhood of RT #1 [907483, 912614] RVT-GII TnpB_IS66 Neighborhood of RT #2 [925927, 935299] PRK05478 PDR_like RVT-GII InsE TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT_N RVT-GII GIIM DDE_Tnp_1 Feature: gene Location: 907483-907908 bp Feature: gene Location: 908117-908470 bp Feature: gene Location: 909387-909689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 909591-909678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 909591-90967 8 bp Feature: gene Location: 910095-910445 bp Feature: domain Description: TnpB_IS66 Location: 910167-910320 bp Feature: domain Description: TnpB_IS66 Location: 910167 -910320 bp Feature: gene Location: 911619-912614 bp Feature: gene Location: 925927-927327 bp Feature: domain Description: PRK05478 Location: 925930-927322 bp Feature: domain Description: PRK0547 8 Location: 925930-927 322 bp Feature: gene Location: 927507-928379 bp Feature: domain Description: PDR_like Location: 927639-928242 bp Feature: domain Description: PDR_like Location: 927 639-928242 bp Feature: gene Location: 928589-929659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 929273-929654 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92927 3-929654 bp Feature: gene Location: 929845-930165 bp Feature: domain Description: InsE Location: 929851-930052 bp Feature: domain Description: InsE Location: 929851-930052 bp Feature: gene Location: 930162-930497 bp Feature: domain Description: TnpB_IS66 Location: 930180-930468 bp Feature: domain Description: TnpB_IS66 Location: 930180-930468 bp Feature: gene Location: 930561-931898 bp Feature: domain Description: LZ_Tnp_IS66 Location: 930702-930915 bp Feature: domain Description: LZ_Tnp_IS66 Location: 9307 02-930915 bp Feature: domain Description: zf-IS66 Location: 930936-931062 bp Feature: domain Description: zf-IS66 Location: 930936-931062 bp Feature: domain Description: DDE_Tnp_IS66 Location: 931104-931878 bp Feature: domain Description: DDE_Tnp_IS66 Location: 931104-93187 8 bp Feature: gene Location: 932454-934052 bp Feature: RT Description: RVT_N Location: 932499-932742 bp Feature: RT Description: RVT_N Location: 932499-9327 42 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 932787-933423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9327 87 -933423 bp Feature: domain Description: GIIM Note: maturase Location: 933477-933708 bp Feature: domain Description: GIIM Note: maturase Location: 93347 7 -9337 08 bp Feature: gene Location: 934136-934333 bp Feature: gene Location: 934400-935299 bp Feature: domain Description: DDE_Tnp_1 Location: 934565-935243 bp Feature: domain Description: DDE_Tnp_1 Location: 934565-935243 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, TnpB_IS66 (pfam05717), PRK05478 (3-isopropylmalate dehydratase large subunit), PDR_like (cd06185), InsE (COG2963), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), RVT_N (pfam13655), GIIM (pfam08388)
DDE_Tnp_1 (pfam01609)

Seq: MING01000087.1 Pseudomonas putida strain KH-18-2 scaffold7_cov85, whole genome shotgun sequence (453092 bp)
Overview 1 RT 1: 76771-84020 bp 2 RT 2: 196269-203472 bp 3 RT 3: 277304-282782 bp Neighborhood of RT #1 [76771, 84020] AraC_binding_2 HTH_18 RVT-GII Recombinase Zn_ribbon_recom HTH_17 HTH_17 Ser_Recombinase Resolvase Recombinase Zn_ribbon_recom Resolvase RVT-GII Neighborhood of RT #2 [196269, 203492] Porin_O_P RVT-GII GIIM Hydantoinase_B HyuA Neighborhood of RT #3 [277304, 283417] RVT-GII GIIM Rep_3 Feature: gene Location: 76771-77034 bp Feature: gene Location: 77038-78033 bp Feature: domain Description: AraC_binding_2 Location: 77104-77560 bp Feature: domain Description: AraC_binding_2 Location: 77104-77560 bp Feature: domain Description: HTH_18 Location: 77737-77983 bp Feature: domain Description: HTH_18 Location: 77737-7798 3 bp Feature: gene Location: 78095-78382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78266-78368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78 266-78 368 bp Feature: gene Location: 78444-80075 bp Feature: domain Description: Recombinase Location: 78453-78801 bp Feature: domain Description: Recombinase Location: 78 453-78 8 01 bp Feature: domain Description: Zn_ribbon_recom Location: 78858-79026 bp Feature: domain Description: Zn_ribbon_recom Location: 78 8 58 -79026 bp Feature: domain Description: HTH_17 Location: 79737-79860 bp Feature: domain Description: HTH_17 Location: 79737-798 60 bp Feature: domain Description: HTH_17 Location: 79920-80034 bp Feature: domain Description: HTH_17 Location: 79920-8 0034 bp Feature: gene Location: 80072-80650 bp Feature: domain Description: Ser_Recombinase Location: 80129-80501 bp Feature: domain Description: Ser_Recombinase Location: 8 0129-8 0501 bp Feature: gene Location: 80982-82661 bp Feature: domain Description: Resolvase Location: 80985-81153 bp Feature: domain Description: Resolvase Location: 8 098 5-8 1153 bp Feature: domain Description: Recombinase Location: 81249-81606 bp Feature: domain Description: Recombinase Location: 8 1249-8 1606 bp Feature: domain Description: Zn_ribbon_recom Location: 81648-81852 bp Feature: domain Description: Zn_ribbon_recom Location: 8 1648 -8 18 52 bp Feature: gene Location: 82661-82948 bp Feature: domain Description: Resolvase Location: 82682-82913 bp Feature: domain Description: Resolvase Location: 8 268 2-8 2913 bp Feature: gene Location: 83257-83475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83260-83431 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8 3260-8 3431 bp Feature: gene Location: 83618-83794 bp Feature: gene Location: 83802-84020 bp Feature: gene Location: 196269-197447 bp Feature: domain Description: Porin_O_P Location: 196494-197331 bp Feature: domain Description: Porin_O_P Location: 196494-197331 bp Feature: gene Location: 197628-198137 bp Feature: gene Location: 198112-199320 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 198304-198919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 198 304-198 919 bp Feature: domain Description: GIIM Note: maturase Location: 198973-199201 bp Feature: domain Description: GIIM Note: maturase Location: 198 973-199201 bp Feature: gene Location: 199621-201366 bp Feature: domain Description: Hydantoinase_B Location: 199636-201220 bp Feature: domain Description: Hydantoinase_B Location: 199636-201220 bp Feature: gene Location: 201402-203492 bp Feature: domain Description: HyuA Location: 201417-203472 bp Feature: domain Description: HyuA Location: 201417-203472 bp Feature: gene Location: 277304-277486 bp Feature: gene Location: 278030-278497 bp Feature: gene Location: 278990-280339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 279272-279887 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 279272-2798 8 7 bp Feature: domain Description: GIIM Note: maturase Location: 279944-280157 bp Feature: domain Description: GIIM Note: maturase Location: 279944-28 0157 bp Feature: gene Location: 280530-280865 bp Feature: gene Location: 281951-283417 bp Feature: domain Description: Rep_3 Location: 282149-282782 bp Feature: domain Description: Rep_3 Location: 28 2149-28 278 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AraC_binding_2 (pfam14525), HTH_18 (pfam12833), RVT-GII, Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), HTH_17 (pfam12728), Ser_Recombinase (cl02788), Resolvase (smart00857), Porin_O_P (pfam07396), GIIM (pfam08388)
Hydantoinase_B (pfam02538), HyuA (COG0145), Rep_3 (pfam01051)