myRT

myRT report for GCA_002906835.1_ASM290683v1

Download annotations/find similar RTs

Seq: MINH01000016.1 Pseudomonas putida strain KH-21-114 scaffold1_cov120, whole genome shotgun sequence (1286460 bp)
Overview 1 RT 1: 1104956-1113151 bp Neighborhood of RT #1 [1104956, 1113201] PilN PilM RVT_N RVT-GII GIIM HNH MrcA PRK07232 Feature: gene Location: 1104956-1105492 bp Feature: domain Description: PilN Location: 1105256-1105442 bp Feature: domain Description: PilN Location: 1 1 05256-1 1 05442 bp Feature: gene Location: 1105492-1106427 bp Feature: domain Description: PilM Location: 1105579-1106113 bp Feature: domain Description: PilM Location: 1 1 05579-1 1 061 1 3 bp Feature: gene Location: 1107528-1109234 bp Feature: RT Description: RVT_N Location: 1107585-1107828 bp Feature: RT Description: RVT_N Location: 1 1 07585-1 1 07828 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1107873-1108509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 07873-1 1 08509 bp Feature: domain Description: GIIM Note: maturase Location: 1108560-1108794 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 08560-1 1 08794 bp Feature: domain Description: HNH Note: nucleases Location: 1109046-1109184 bp Feature: domain Description: HNH Note: nucleases Location: 1 1 09046-1 1 091 84 bp Feature: gene Location: 1109364-1111817 bp Feature: domain Description: MrcA Location: 1109367-1111743 bp Feature: domain Description: MrcA Location: 1 1 09367-1 1 1 1 743 bp Feature: gene Location: 1111924-1113201 bp Feature: domain Description: PRK07232 Location: 1111942-1113151 bp Feature: domain Description: PRK07232 Location: 1 1 1 1 942-1 1 1 31 51 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PilN (pfam05137), PilM (pfam07419), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), MrcA (COG5009), PRK07232 (bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed)

Seq: MINH01000019.1 Pseudomonas putida strain KH-21-114 scaffold2_cov117, whole genome shotgun sequence (2549844 bp)
Overview 1 RT 1: 1393921-1399718 bp Neighborhood of RT #1 [1393921, 1400068] LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C TnpB_IS66 RVT-GII MPP_PrpA_PrpB Feature: gene Location: 1393921-1395456 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1394062-1394275 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1394062 -13942 75 bp Feature: domain Description: zf-IS66 Location: 1394296-1394422 bp Feature: domain Description: zf-IS66 Location: 13942 96-139442 2 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1394464-1395307 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1394464-1395307 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1395328-1395439 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 139532 8-1395439 bp Feature: gene Location: 1395520-1395855 bp Feature: domain Description: TnpB_IS66 Location: 1395538-1395826 bp Feature: domain Description: TnpB_IS66 Location: 1395538-139582 6 bp Feature: gene Location: 1396328-1398124 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1397042-1397732 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1397042 -1397732 bp Feature: gene Location: 1398193-1398786 bp Feature: gene Location: 1399067-1400068 bp Feature: domain Description: MPP_PrpA_PrpB Location: 1399109-1399718 bp Feature: domain Description: MPP_PrpA_PrpB Location: 1399109-1399718 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), TnpB_IS66 (pfam05717), RVT-GII, MPP_PrpA_PrpB (cd07424)