myRT

myRT report for GCA_002906855.1_ASM290685v1

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Seq: MINI01000028.1 Pseudomonas putida strain KH-21-134 scaffold1_cov96, whole genome shotgun sequence (2555348 bp)
Overview 1 RT 1: 2391564-2397361 bp Neighborhood of RT #1 [2391564, 2397711] LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C TnpB_IS66 RVT-GII MPP_PrpA_PrpB Feature: gene Location: 2391564-2393099 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2391705-2391918 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2391 705-2391 91 8 bp Feature: domain Description: zf-IS66 Location: 2391939-2392065 bp Feature: domain Description: zf-IS66 Location: 2391 939-2392065 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2392107-2392950 bp Feature: domain Description: DDE_Tnp_IS66 Location: 23921 07-2392950 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2392971-2393082 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2392971 -2393082 bp Feature: gene Location: 2393163-2393498 bp Feature: domain Description: TnpB_IS66 Location: 2393181-2393469 bp Feature: domain Description: TnpB_IS66 Location: 23931 81 -2393469 bp Feature: gene Location: 2393971-2395767 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2394685-2395375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2394685-2395375 bp Feature: gene Location: 2395836-2396429 bp Feature: gene Location: 2396710-2397711 bp Feature: domain Description: MPP_PrpA_PrpB Location: 2396752-2397361 bp Feature: domain Description: MPP_PrpA_PrpB Location: 2396752-2397361 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), TnpB_IS66 (pfam05717), RVT-GII, MPP_PrpA_PrpB (cd07424)

Seq: MINI01000048.1 Pseudomonas putida strain KH-21-134 scaffold6_cov96, whole genome shotgun sequence (1275622 bp)
Overview 1 RT 1: 1094120-1102315 bp Neighborhood of RT #1 [1094120, 1102365] PilN PilM RVT_N RVT-GII GIIM HNH MrcA PRK07232 Feature: gene Location: 1094120-1094656 bp Feature: domain Description: PilN Location: 1094420-1094606 bp Feature: domain Description: PilN Location: 109442 0-1094606 bp Feature: gene Location: 1094656-1095591 bp Feature: domain Description: PilM Location: 1094743-1095277 bp Feature: domain Description: PilM Location: 1094743-10952 77 bp Feature: gene Location: 1096692-1098398 bp Feature: RT Description: RVT_N Location: 1096749-1096992 bp Feature: RT Description: RVT_N Location: 1096749-1096992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1097037-1097673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1097037-1097673 bp Feature: domain Description: GIIM Note: maturase Location: 1097724-1097958 bp Feature: domain Description: GIIM Note: maturase Location: 109772 4-1097958 bp Feature: domain Description: HNH Note: nucleases Location: 1098210-1098348 bp Feature: domain Description: HNH Note: nucleases Location: 10982 10-1098348 bp Feature: gene Location: 1098528-1100981 bp Feature: domain Description: MrcA Location: 1098531-1100907 bp Feature: domain Description: MrcA Location: 1098531-1100907 bp Feature: gene Location: 1101088-1102365 bp Feature: domain Description: PRK07232 Location: 1101106-1102315 bp Feature: domain Description: PRK072 32 Location: 1101106-1102 315 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PilN (pfam05137), PilM (pfam07419), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), MrcA (COG5009), PRK07232 (bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed)