myRT

myRT report for GCA_002909565.1_ASM290956v1

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Seq: PQEU01000142.1 Escherichia coli strain ECPET11 Contig_156, whole genome shotgun sequence (72346 bp)
Overview 1 RT 1: 25384-28124 bp Neighborhood of RT #1 [25384, 28124] SLATT_5 RVT-UG17 Caudo_TAP Feature: gene Location: 25384-25524 bp Feature: gene Location: 25537-26088 bp Feature: domain Description: SLATT_5 Location: 25543-26059 bp Feature: domain Description: SLATT_5 Location: 25543-26059 bp Feature: gene Location: 26066-27436 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 26294-26900 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 26294-26900 bp Feature: gene Location: 27549-27791 bp Feature: domain Description: Caudo_TAP Location: 27561-27780 bp Feature: domain Description: Caudo_TAP Location: 27561 -27780 bp Feature: gene Location: 27807-28124 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, Caudo_TAP (pfam02413)

Seq: PQEU01000125.1 Escherichia coli strain ECPET11 Contig_159, whole genome shotgun sequence (39616 bp)
Overview 1 RT 1: 33438-36327 bp Neighborhood of RT #1 [33438, 36327] RVT-GII GIIM RVT-GII Feature: gene Location: 33438-33656 bp Feature: gene Location: 33699-33869 bp Feature: gene Location: 34032-34685 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34035-34443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34035-34443 bp Feature: domain Description: GIIM Note: maturase Location: 34491-34683 bp Feature: domain Description: GIIM Note: maturase Location: 34491-34683 bp Feature: gene Location: 34658-35092 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34850-35066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34850-35066 bp Feature: gene Location: 35261-35458 bp Feature: gene Location: 36001-36327 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PQEU01000149.1 Escherichia coli strain ECPET11 Contig_162, whole genome shotgun sequence (95549 bp)
Overview 1 RT 1: 1038-4999 bp Neighborhood of RT #1 [1038, 5109] InsE PHA02517 RVT-GII GIIM PHA02517 Ogr_Delta Feature: gene Location: 1038-1340 bp Feature: domain Description: InsE Location: 1047-1329 bp Feature: domain Description: InsE Location: 1047-13 29 bp Feature: gene Location: 1367-1792 bp Feature: domain Description: PHA02517 Location: 1391-1727 bp Feature: domain Description: PHA02517 Location: 13 91-1727 bp Feature: gene Location: 2384-3907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2657-3389 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2657-3 3 89 bp Feature: domain Description: GIIM Note: maturase Location: 3464-3662 bp Feature: domain Description: GIIM Note: maturase Location: 3 464-3 662 bp Feature: gene Location: 4107-4781 bp Feature: domain Description: PHA02517 Location: 4113-4758 bp Feature: domain Description: PHA02517 Location: 4113 -4758 bp Feature: gene Location: 4849-5109 bp Feature: domain Description: Ogr_Delta Location: 4858-4999 bp Feature: domain Description: Ogr_Delta Location: 4858-4999 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), Ogr_Delta (pfam04606)

Seq: PQEU01000092.1 Escherichia coli strain ECPET11 Contig_166, whole genome shotgun sequence (17410 bp)
Overview 1 RT 1: 7376-11545 bp Neighborhood of RT #1 [7376, 11547] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc PRK13732 Feature: gene Location: 7376-7609 bp Feature: domain Description: DUF905 Location: 7406-7604 bp Feature: domain Description: DUF905 Location: 74 06-7604 bp Feature: gene Location: 7672-8124 bp Feature: domain Description: PRK13732 Location: 7678-8122 bp Feature: domain Description: PRK13732 Location: 7678-8122 bp Feature: gene Location: 8319-10220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8586-9417 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8586-94 17 bp Feature: domain Description: Intron_maturas2 Location: 9531-9789 bp Feature: domain Description: Intron_maturas2 Location: 9531-9789 bp Feature: domain Description: HNHc Note: nucleases Location: 9963-10125 bp Feature: domain Description: HNHc Note: nucleases Location: 9963-10125 bp Feature: gene Location: 10822-10962 bp Feature: gene Location: 11020-11547 bp Feature: domain Description: PRK13732 Location: 11023-11545 bp Feature: domain Description: PRK13732 Location: 11023-1154 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)