myRT

myRT report for GCA_002909565.2_ECPET11

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Seq: PQEU02000014.1 Escherichia coli strain ECPET11 NODE_14_length_106647_cov_43.1626, whole genome shotgun sequence (106647 bp)
Overview 1 RT 1: 26469-29803 bp Neighborhood of RT #1 [26469, 29808] Caudo_TAP RVT-UG17 SLATT_5 PRK10597 Feature: gene Location: 26469-26741 bp Feature: gene Location: 26741-27325 bp Feature: domain Description: Caudo_TAP Location: 26957-27314 bp Feature: domain Description: Caudo_TAP Location: 26957-2731 4 bp Feature: gene Location: 27438-28808 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 27666-28272 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 27666-28272 bp Feature: gene Location: 28786-29337 bp Feature: domain Description: SLATT_5 Location: 28792-29308 bp Feature: domain Description: SLATT_5 Location: 28792-29308 bp Feature: gene Location: 29560-29808 bp Feature: domain Description: PRK10597 Location: 29563-29803 bp Feature: domain Description: PRK1 0597 Location: 29563-29803 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Caudo_TAP (pfam02413), RVT-UG17, SLATT_5 (pfam18160), PRK10597 (DNA damage-inducible protein I; Provisional)

Seq: PQEU02000070.1 Escherichia coli strain ECPET11 NODE_70_length_8081_cov_47.9454, whole genome shotgun sequence (8081 bp)
Overview 1 RT 1: 959-4848 bp Neighborhood of RT #1 [959, 4853] RVT-GII RVT-GII GIIM LacI PBP1_GntR Feature: gene Location: 959-1273 bp Feature: gene Location: 1671-1868 bp Feature: gene Location: 2037-2471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2229-2445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 2 9-2 445 bp Feature: gene Location: 2444-3097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2447-2855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 447-2 855 bp Feature: domain Description: GIIM Note: maturase Location: 2903-3095 bp Feature: domain Description: GIIM Note: maturase Location: 2 903-3095 bp Feature: gene Location: 3473-3691 bp Feature: gene Location: 3822-4853 bp Feature: domain Description: LacI Location: 3864-3999 bp Feature: domain Description: LacI Location: 3864-3999 bp Feature: domain Description: PBP1_GntR Location: 4038-4848 bp Feature: domain Description: PBP1_GntR Location: 4038-4848 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), LacI (pfam00356), PBP1_GntR (cd01575)

Seq: PQEU02000087.1 Escherichia coli strain ECPET11 NODE_87_length_4091_cov_42.3171, whole genome shotgun sequence (4091 bp)
Overview 1 RT 1: 168-2615 bp Neighborhood of RT #1 [168, 2615] RVT-GII GIIM Feature: gene Location: 168-1691 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 441-1173 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 441-1173 bp Feature: domain Description: GIIM Note: maturase Location: 1248-1446 bp Feature: domain Description: GIIM Note: maturase Location: 1248-1446 bp Feature: gene Location: 1985-2422 bp Feature: gene Location: 2409-2615 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PQEU02000088.1 Escherichia coli strain ECPET11 NODE_88_length_4012_cov_73.8488, whole genome shotgun sequence (4012 bp)
Overview 1 RT 1: 3-4009 bp Neighborhood of RT #1 [3, 4009] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 3-146 bp Feature: domain Description: DUF905 Location: 33-144 bp Feature: domain Description: DUF905 Location: 33-14 4 bp Feature: gene Location: 209-661 bp Feature: domain Description: PRK13732 Location: 215-659 bp Feature: domain Description: PRK13732 Location: 215-659 bp Feature: gene Location: 856-2757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1123-1954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1123-1954 bp Feature: domain Description: Intron_maturas2 Location: 2068-2326 bp Feature: domain Description: Intron_maturas2 Location: 2068-2326 bp Feature: domain Description: HNHc Note: nucleases Location: 2500-2662 bp Feature: domain Description: HNHc Note: nucleases Location: 2500-2662 bp Feature: gene Location: 3435-3575 bp Feature: gene Location: 3641-4009 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)