myRT

myRT report for GCA_002910825.1_ASM291082v1

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Seq: NEUB01000624.1 Streptomyces sp. SM1 2631_1748_736500_76...2574+, whole genome shotgun sequence (1748 bp)
Overview 1 RT 1: 3-1590 bp Neighborhood of RT #1 [3, 1658] DDE_Tnp_4 RVT-GII GIIM Feature: gene Location: 3-455 bp Feature: domain Description: DDE_Tnp_4 Location: 330-456 bp Feature: domain Description: DDE_Tnp_4 Location: 330-456 bp Feature: gene Location: 372-1658 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 627-1284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 627-1 284 bp Feature: domain Description: GIIM Note: maturase Location: 1362-1590 bp Feature: domain Description: GIIM Note: maturase Location: 1 362-1 590 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_4 (pfam13359), RVT-GII, GIIM (pfam08388)

Seq: NEUB01000718.1 Streptomyces sp. SM1 2734_31970_3877221_723...2219, whole genome shotgun sequence (31970 bp)
Overview 1 RT 1: 2-2559 bp Neighborhood of RT #1 [2, 2559] RVT-GII GIIM Feature: gene Location: 2-664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-269 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-2 69 bp Feature: domain Description: GIIM Note: maturase Location: 359-572 bp Feature: domain Description: GIIM Note: maturase Location: 359-572 bp Feature: gene Location: 802-1365 bp Feature: gene Location: 1837-2559 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NEUB01000744.1 Streptomyces sp. SM1 2764_5934_1186497_905+...1762+, whole genome shotgun sequence (5934 bp)
Overview 1 RT 1: 62-2966 bp Neighborhood of RT #1 [62, 2971] RVT-GII GIIM PspE PA_CoA_Oxy5 Feature: gene Location: 62-1393 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 407-1034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 407-103 4 bp Feature: domain Description: GIIM Note: maturase Location: 1124-1340 bp Feature: domain Description: GIIM Note: maturase Location: 1124-13 40 bp Feature: gene Location: 1538-1885 bp Feature: domain Description: PspE Location: 1586-1853 bp Feature: domain Description: PspE Location: 1586-1853 bp Feature: gene Location: 1913-2971 bp Feature: domain Description: PA_CoA_Oxy5 Location: 1925-2966 bp Feature: domain Description: PA_CoA_Oxy5 Location: 1925-2966 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PspE (COG0607), PA_CoA_Oxy5 (TIGR02160)

Seq: NEUB01000745.1 Streptomyces sp. SM1 2765_16596_2474980_905+...1821, whole genome shotgun sequence (16596 bp)
Overview 1 RT 1: 62-2921 bp Neighborhood of RT #1 [62, 2921] RVT-GII GIIM HTH_YyaN Feature: gene Location: 62-1429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 407-1034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 07-1034 bp Feature: domain Description: GIIM Note: maturase Location: 1124-1340 bp Feature: domain Description: GIIM Note: maturase Location: 1124 -134 0 bp Feature: gene Location: 1538-2008 bp Feature: domain Description: HTH_YyaN Location: 1637-1970 bp Feature: domain Description: HTH_YyaN Location: 1637-1970 bp Feature: gene Location: 2388-2921 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HTH_YyaN (cd01109)

Seq: NEUB01000749.1 Streptomyces sp. SM1 2769_3893_790280_948...2564+, whole genome shotgun sequence (3893 bp)
Overview 1 RT 1: 76-3867 bp Neighborhood of RT #1 [76, 3890] RVT_N RVT-GII GIIM HNHc MM_CoA_mutase_ICM_like Feature: gene Location: 76-1827 bp Feature: domain Description: RVT_N Location: 139-379 bp Feature: domain Description: RVT_N Location: 139-379 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 433-1075 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 433-1075 bp Feature: domain Description: GIIM Note: maturase Location: 1126-1360 bp Feature: domain Description: GIIM Note: maturase Location: 1126-1360 bp Feature: domain Description: HNHc Note: nucleases Location: 1564-1777 bp Feature: domain Description: HNHc Note: nucleases Location: 15 64-1777 bp Feature: gene Location: 2532-3890 bp Feature: domain Description: MM_CoA_mutase_ICM_like Location: 2538-3867 bp Feature: domain Description: MM_CoA_mutase_ICM_like Location: 25 38-3867 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), MM_CoA_mutase_ICM_like (cd03680)

Seq: NEUB01000768.1 Streptomyces sp. SM1 2791_94713_9098408_1056+2579, whole genome shotgun sequence (94713 bp)
Overview 1 RT 1: 56191-70442 bp Neighborhood of RT #1 [56191, 70442] ClpA ClpA LAGLIDADG_3 ClpA RVT-GII GIIM HTH_MerR-trunc HTH_MerR-trunc PinE Zn_ribbon_recom HTH_17 HTH_17 DUF5372 group_II_RT_mat RVT-GII Intron_maturas2 SH3_3 Feature: gene Location: 56191-58257 bp Feature: gene Location: 58401-61310 bp Feature: domain Description: ClpA Location: 58482-59142 bp Feature: domain Description: ClpA Location: 58482-59142 bp Feature: domain Description: ClpA Location: 59217-59370 bp Feature: domain Description: ClpA Location: 59217-59370 bp Feature: domain Description: LAGLIDADG_3 Location: 60087-60321 bp Feature: domain Description: LAGLIDADG_3 Location: 6 0087-6 0321 bp Feature: domain Description: ClpA Location: 60516-61236 bp Feature: domain Description: ClpA Location: 6 0516 -6 1236 bp Feature: gene Location: 61681-62781 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61687-62332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 16 87-6 2332 bp Feature: domain Description: GIIM Note: maturase Location: 62404-62632 bp Feature: domain Description: GIIM Note: maturase Location: 6 2404-6 26 32 bp Feature: gene Location: 62789-63286 bp Feature: domain Description: HTH_MerR-trunc Location: 62846-62954 bp Feature: domain Description: HTH_MerR-trunc Location: 6 2846 -6 2954 bp Feature: domain Description: HTH_MerR-trunc Location: 63074-63188 bp Feature: domain Description: HTH_MerR-trunc Location: 6 3074-6 3188 bp Feature: gene Location: 63353-65521 bp Feature: domain Description: PinE Location: 63404-63989 bp Feature: domain Description: PinE Location: 6 3404-6 3989 bp Feature: domain Description: Zn_ribbon_recom Location: 64346-64514 bp Feature: domain Description: Zn_ribbon_recom Location: 6 4346 -6 4514 bp Feature: domain Description: HTH_17 Location: 65204-65315 bp Feature: domain Description: HTH_17 Location: 6 5204-6 5315 bp Feature: domain Description: HTH_17 Location: 65420-65519 bp Feature: domain Description: HTH_17 Location: 6 5420-6 5519 bp Feature: gene Location: 65652-65906 bp Feature: domain Description: DUF5372 Location: 65661-65847 bp Feature: domain Description: DUF5372 Location: 6 56 6 1-6 5847 bp Feature: gene Location: 65938-66222 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 65992-66211 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 6 5992-6 6 211 bp Feature: gene Location: 66291-67985 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66483-67278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 6 483-6 7278 bp Feature: domain Description: Intron_maturas2 Location: 67374-67599 bp Feature: domain Description: Intron_maturas2 Location: 6 7374-6 7599 bp Feature: gene Location: 69303-69680 bp Feature: domain Description: SH3_3 Location: 69471-69633 bp Feature: domain Description: SH3_3 Location: 6 9471-6 96 33 bp Feature: gene Location: 69888-70442 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ClpA (TIGR02639), LAGLIDADG_3 (pfam14528), RVT-GII, GIIM (pfam08388), HTH_MerR-trunc (cd04762), PinE (COG1961), Zn_ribbon_recom (pfam13408), HTH_17 (pfam12728), DUF5372 (pfam17342), group_II_RT_mat (TIGR04416)
Intron_maturas2 (pfam01348), SH3_3 (pfam08239)

Seq: NEUB01000788.1 Streptomyces sp. SM1 2812_2511_521628_1181+...723+, whole genome shotgun sequence (2511 bp)
Overview 1 RT 1: 2-2418 bp Neighborhood of RT #1 [2, 2510] CcmA YjhB RVT-GII GIIM Feature: gene Location: 2-1783 bp Feature: domain Description: CcmA Location: 962-1607 bp Feature: domain Description: CcmA Location: 962-1607 bp Feature: gene Location: 982-1740 bp Feature: domain Description: YjhB Location: 1021-1576 bp Feature: domain Description: YjhB Location: 1021-157 6 bp Feature: gene Location: 1848-2510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1851-2115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1851-2115 bp Feature: domain Description: GIIM Note: maturase Location: 2205-2418 bp Feature: domain Description: GIIM Note: maturase Location: 2205-2418 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CcmA (COG4133), YjhB (COG1051), RVT-GII, GIIM (pfam08388)

Seq: NEUB01000797.1 Streptomyces sp. SM1 2821_3778_671103_1268+...723+, whole genome shotgun sequence (3778 bp)
Overview 1 RT 1: 720-3685 bp Neighborhood of RT #1 [720, 3777] YabE TatD_DNAse RVT-GII GIIM Feature: gene Location: 720-2006 bp Feature: domain Description: YabE Location: 945-1809 bp Feature: domain Description: YabE Location: 945-18 09 bp Feature: gene Location: 2096-3007 bp Feature: domain Description: TatD_DNAse Location: 2165-3002 bp Feature: domain Description: TatD_DNAse Location: 2165-3002 bp Feature: gene Location: 3115-3777 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3118-3382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3118 -338 2 bp Feature: domain Description: GIIM Note: maturase Location: 3472-3685 bp Feature: domain Description: GIIM Note: maturase Location: 3472-368 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YabE (COG3583), TatD_DNAse (cd01310), RVT-GII, GIIM (pfam08388)

Seq: NEUB01000805.1 Streptomyces sp. SM1 2829_1888_793934_1300...723, whole genome shotgun sequence (1888 bp)
Overview 1 RT 1: 254-1739 bp Neighborhood of RT #1 [254, 1834] RVT-GII GIIM Feature: gene Location: 254-1834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 812-1439 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 812-1439 bp Feature: domain Description: GIIM Note: maturase Location: 1529-1739 bp Feature: domain Description: GIIM Note: maturase Location: 1529 -1739 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NEUB01000818.1 Streptomyces sp. SM1 2842_11749_1857743_1391+...723, whole genome shotgun sequence (11749 bp)
Overview 1 RT 1: 9455-11603 bp Neighborhood of RT #1 [9455, 11695] RsmI RVT-GII GIIM Feature: gene Location: 9455-10321 bp Feature: domain Description: RsmI Location: 9458-10286 bp Feature: domain Description: RsmI Location: 9458-10 286 bp Feature: gene Location: 10554-10856 bp Feature: gene Location: 11063-11695 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11066-11273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110 66-11273 bp Feature: domain Description: GIIM Note: maturase Location: 11390-11603 bp Feature: domain Description: GIIM Note: maturase Location: 11390-11603 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RsmI (COG0313), RVT-GII, GIIM (pfam08388)

Seq: NEUB01000848.1 Streptomyces sp. SM1 2873_15889_2154960_1542...1667+, whole genome shotgun sequence (15889 bp)
Overview 1 RT 1: 2-2922 bp Neighborhood of RT #1 [2, 2969] RVT-GII DUF3631 HTH_17 Feature: gene Location: 2-442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-443 bp Feature: gene Location: 1534-2631 bp Feature: domain Description: DUF3631 Location: 2287-2623 bp Feature: domain Description: DUF3631 Location: 2287-2623 bp Feature: gene Location: 2775-2969 bp Feature: domain Description: HTH_17 Location: 2784-2922 bp Feature: domain Description: HTH_17 Location: 2784-2922 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DUF3631 (pfam12307), HTH_17 (pfam12728)

Seq: NEUB01000854.1 Streptomyces sp. SM1 2879_3137_1708431_1568+...1542+, whole genome shotgun sequence (3137 bp)
Overview 1 RT 1: 64-3137 bp Neighborhood of RT #1 [64, 3136] zf-IS66 DDE_Tnp_IS66 PHA02517 RVT-GII Feature: gene Location: 64-1560 bp Feature: domain Description: zf-IS66 Location: 415-556 bp Feature: domain Description: zf-IS66 Location: 415-556 bp Feature: domain Description: DDE_Tnp_IS66 Location: 604-1417 bp Feature: domain Description: DDE_Tnp_IS66 Location: 604-1417 bp Feature: gene Location: 1636-1911 bp Feature: domain Description: PHA02517 Location: 1723-1888 bp Feature: domain Description: PHA02517 Location: 1723-1888 bp Feature: gene Location: 2438-3136 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2654-3137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2654-3137 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII

Seq: NEUB01000975.1 Streptomyces sp. SM1 3013_3202_636782_2349...2559+, whole genome shotgun sequence (3202 bp)
Overview 1 RT 1: 32-2958 bp Neighborhood of RT #1 [32, 2958] PHA02517 InsE RVT-GII Feature: gene Location: 32-958 bp Feature: domain Description: PHA02517 Location: 119-914 bp Feature: domain Description: PHA02517 Location: 119-914 bp Feature: gene Location: 961-1260 bp Feature: domain Description: InsE Location: 970-1240 bp Feature: domain Description: InsE Location: 970-1240 bp Feature: gene Location: 1296-1898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1332-1836 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 32-1836 bp Feature: gene Location: 2235-2594 bp Feature: gene Location: 2707-2958 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), RVT-GII

Seq: NEUB01000992.1 Streptomyces sp. SM1 3032_10384_1596175_2478+...723+, whole genome shotgun sequence (10384 bp)
Overview 1 RT 1: 7173-10291 bp Neighborhood of RT #1 [7173, 10383] Transglycosylas CypX RVT-GII GIIM Feature: gene Location: 7173-8066 bp Feature: domain Description: Transglycosylas Location: 7227-7455 bp Feature: domain Description: Transglycosylas Location: 7227-7455 bp Feature: gene Location: 8330-9613 bp Feature: domain Description: CypX Location: 8357-9599 bp Feature: domain Description: CypX Location: 8357-9599 bp Feature: gene Location: 9721-10383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9724-9988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9724-9988 bp Feature: domain Description: GIIM Note: maturase Location: 10078-10291 bp Feature: domain Description: GIIM Note: maturase Location: 10078-10291 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Transglycosylas (pfam06737), CypX (COG2124), RVT-GII, GIIM (pfam08388)

Seq: NEUB01001021.1 Streptomyces sp. SM1 3064_16215_1493010_2574+...893+, whole genome shotgun sequence (16215 bp)
Overview 1 RT 1: 1-1484 bp Neighborhood of RT #1 [1, 1484] RVT-GII GIIM Feature: gene Location: 1-624 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-250 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-250 bp Feature: domain Description: GIIM Note: maturase Location: 328-556 bp Feature: domain Description: GIIM Note: maturase Location: 328-556 bp Feature: gene Location: 1026-1199 bp Feature: gene Location: 1239-1484 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NEUB01001022.1 Streptomyces sp. SM1 3065_20015_1777851_2574+882+, whole genome shotgun sequence (20015 bp)
Overview 1 RT 1: 1-2107 bp Neighborhood of RT #1 [1, 2107] RVT-GII GIIM Tra5 Feature: gene Location: 1-624 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-250 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-250 bp Feature: domain Description: GIIM Note: maturase Location: 328-556 bp Feature: domain Description: GIIM Note: maturase Location: 328-556 bp Feature: gene Location: 952-1803 bp Feature: domain Description: Tra5 Location: 1048-1618 bp Feature: domain Description: Tra5 Location: 1048-16 18 bp Feature: gene Location: 1670-2107 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Tra5 (COG2801)