myRT

myRT report for GCA_002911515.1_ASM291151v1

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Seq: PQBL01000010.1 Mycobacterium marinum strain 1218RDel NODE_10_length_116129_cov_25.4198, whole genome shotgun sequence (116129 bp)
Overview 1 RT 1: 70404-76239 bp Neighborhood of RT #1 [70404, 76340] YHI9 RVT-CRISPR-like RnaI Feature: gene Location: 70404-70820 bp Feature: gene Location: 70954-71742 bp Feature: domain Description: YHI9 Location: 70957-71734 bp Feature: domain Description: YHI9 Location: 70957-71 734 bp Feature: gene Location: 71979-73310 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 72219-72840 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 7221 9-72840 bp Feature: gene Location: 73303-75438 bp Feature: gene Location: 75558-76340 bp Feature: domain Description: RnaI Location: 75660-76239 bp Feature: domain Description: RnaI Location: 75660-76239 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YHI9 (COG0384), RVT-CRISPR, RnaI (COG3719)

Seq: PQBL01000060.1 Mycobacterium marinum strain 1218RDel NODE_60_length_34694_cov_26.285, whole genome shotgun sequence (34694 bp)
Overview 1 RT 1: 2-4905 bp Neighborhood of RT #1 [2, 4934] PHA02517 RVT-GII GIIM HTH_23 COG4584 PRK06526 Feature: gene Location: 2-202 bp Feature: domain Description: PHA02517 Location: 20-128 bp Feature: domain Description: PHA02 517 Location: 2 0-12 8 bp Feature: gene Location: 318-509 bp Feature: gene Location: 791-2182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1052-1739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1052 -1739 bp Feature: domain Description: GIIM Note: maturase Location: 1814-2009 bp Feature: domain Description: GIIM Note: maturase Location: 1814-2 009 bp Feature: gene Location: 2608-4125 bp Feature: domain Description: HTH_23 Location: 2611-2749 bp Feature: domain Description: HTH_2 3 Location: 2 611-2 749 bp Feature: domain Description: COG4584 Location: 2881-3472 bp Feature: domain Description: COG4584 Location: 2 881-3472 bp Feature: gene Location: 4122-4934 bp Feature: domain Description: PRK06526 Location: 4209-4905 bp Feature: domain Description: PRK0652 6 Location: 42 09-4905 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), COG4584 (Transposase ), PRK06526 (transposase; Provisional), RVT-GII, GIIM (pfam08388)