myRT

myRT report for GCA_002911595.1_ASM291159v1

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Seq: PQBO01000015.1 Mycobacterium marinum strain 1218R NODE_15_length_61931_cov_9.72963, whole genome shotgun sequence (61931 bp)
Overview 1 RT 1: 46599-52434 bp Neighborhood of RT #1 [46599, 52535] YHI9 RVT-CRISPR-like RnaI Feature: gene Location: 46599-47015 bp Feature: gene Location: 47149-47937 bp Feature: domain Description: YHI9 Location: 47152-47929 bp Feature: domain Description: YHI9 Location: 471 52-47929 bp Feature: gene Location: 48174-49505 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 48414-49035 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 4841 4-49035 bp Feature: gene Location: 49498-51633 bp Feature: gene Location: 51753-52535 bp Feature: domain Description: RnaI Location: 51855-52434 bp Feature: domain Description: RnaI Location: 51 855-52434 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YHI9 (COG0384), RVT-CRISPR, RnaI (COG3719)

Seq: PQBO01000057.1 Mycobacterium marinum strain 1218R NODE_57_length_34527_cov_8.75355, whole genome shotgun sequence (34527 bp)
Overview 1 RT 1: 2-4974 bp Neighborhood of RT #1 [2, 5003] PHA02517 RVT-GII GIIM HTH_23 COG4584 PRK06526 Feature: gene Location: 2-271 bp Feature: domain Description: PHA02517 Location: 17-197 bp Feature: domain Description: PHA02 517 Location: 17-197 bp Feature: gene Location: 387-578 bp Feature: gene Location: 860-2251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1121-1808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 112 1-1808 bp Feature: domain Description: GIIM Note: maturase Location: 1883-2078 bp Feature: domain Description: GIIM Note: maturase Location: 1883-2 078 bp Feature: gene Location: 2677-4194 bp Feature: domain Description: HTH_23 Location: 2680-2818 bp Feature: domain Description: HTH_2 3 Location: 2 680-2 818 bp Feature: domain Description: COG4584 Location: 2950-3541 bp Feature: domain Description: COG4584 Location: 2 950-3541 bp Feature: gene Location: 4191-5003 bp Feature: domain Description: PRK06526 Location: 4278-4974 bp Feature: domain Description: PRK0652 6 Location: 42 78-4974 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), COG4584 (Transposase ), PRK06526 (transposase; Provisional), RVT-GII, GIIM (pfam08388)