myRT

myRT report for GCA_002912215.1_ASM291221v1

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Seq: PHSM01000020.1 Bacillus thuringiensis serovar kurstaki strain BGSC 4D4 plasmid pBGSC4D4 59883, whole genome shotgun sequence (71781 bp)
Overview 1 RT 1: 62571-68786 bp Neighborhood of RT #1 [62571, 68875] Lysozyme_like Spr RVT-GII HNHc Lysozyme_like VirB4_CagE Feature: gene Location: 62571-63179 bp Feature: gene Location: 63203-63958 bp Feature: domain Description: Lysozyme_like Location: 63206-63542 bp Feature: domain Description: Lysozyme_like Location: 63206-63542 bp Feature: domain Description: Spr Location: 63554-63944 bp Feature: domain Description: Spr Location: 63554-63944 bp Feature: gene Location: 64074-65843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64332-65028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64332-65028 bp Feature: domain Description: HNHc Note: nucleases Location: 65589-65727 bp Feature: domain Description: HNHc Note: nucleases Location: 65589-65727 bp Feature: gene Location: 66553-66939 bp Feature: domain Description: Lysozyme_like Location: 66772-66919 bp Feature: domain Description: Lysozyme_like Location: 66772-6691 9 bp Feature: gene Location: 66941-68875 bp Feature: domain Description: VirB4_CagE Location: 67271-68786 bp Feature: domain Description: VirB4_CagE Location: 67271 -68786 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Lysozyme_like (pfam13702), Spr (COG0791), RVT-GII, HNHc (smart00507), VirB4_CagE (TIGR00929)

Seq: PHSM01000055.1 Bacillus thuringiensis serovar kurstaki strain BGSC 4D4 plasmid pBGSC4D4 59919, whole genome shotgun sequence (8866 bp)
Overview 1 RT 1: 567-5195 bp Neighborhood of RT #1 [567, 5206] DDE_Tnp_1 RVT-GII GIIM recomb_XerD Feature: gene Location: 567-1631 bp Feature: domain Description: DDE_Tnp_1 Location: 933-1617 bp Feature: domain Description: DDE_Tnp_1 Location: 933-1617 bp Feature: gene Location: 1783-1962 bp Feature: gene Location: 2112-3443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2421-3060 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 42 1-3060 bp Feature: domain Description: GIIM Note: maturase Location: 3135-3360 bp Feature: domain Description: GIIM Note: maturase Location: 3135-3360 bp Feature: gene Location: 3668-3979 bp Feature: gene Location: 4352-5206 bp Feature: domain Description: recomb_XerD Location: 4370-5195 bp Feature: domain Description: recomb_XerD Location: 4370-5195 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), recomb_XerD (TIGR02225), DDE_Tnp_1 (pfam01609)

Seq: PHSM01000001.1 Bacillus thuringiensis serovar kurstaki strain BGSC 4D4 60248, whole genome shotgun sequence (5646799 bp)
Overview 1 RT 1: 206661-210560 bp 2 RT 2: 691588-695607 bp 3 RT 3: 793506-797195 bp 4 RT 4: 1085009-1088403 bp 5 RT 5: 2098160-2102519 bp 6 RT 6: 2164037-2167726 bp 7 RT 7: 2631382-2635718 bp 8 RT 8: 3269347-3275691 bp 9 RT 9: 3369689-3373577 bp 10 RT 10: 3614776-3619286 bp 11 RT 11: 3790765-3797199 bp 12 RT 12: 3991092-3999199 bp 13 RT 13: 5213548-5217480 bp 14 RT 14: 5484810-5488635 bp 15 RT 15: 5607832-5612493 bp Neighborhood of RT #1 [206661, 210565] DDE_Tnp_1 RVT-GII GIIM DppB Neighborhood of RT #2 [691588, 695612] DDE_Tnp_1 RVT-GII GIIM VOC_Bs_YwkD_like Neighborhood of RT #3 [793506, 797195] DDE_Tnp_1 RVT-GII GIIM Neighborhood of RT #4 [1085009, 1088403] DDE_Tnp_1 RVT-GII GIIM Neighborhood of RT #5 [2098160, 2102533] DDE_Tnp_1 RVT-GII GIIM CC3_like_SDR_a Neighborhood of RT #6 [2164037, 2167726] DDE_Tnp_1 RVT-GII GIIM Neighborhood of RT #7 [2631382, 2635720] Lysozyme_like RVT-GII Intron_maturas2 HNHc RimL Neighborhood of RT #8 [3269347, 3275720] Uup Uup HATPase_BceS-YxdK-YvcQ-like RVT-GII HNHc OmpR Neighborhood of RT #9 [3369689, 3373591] DUF2187 RVT-GII GIIM DDE_Tnp_1 Neighborhood of RT #10 [3614776, 3619300] COG4584 RVT-GII GIIM DDE_Tnp_1 Neighborhood of RT #11 [3790765, 3797204] GltS_FMN OYE_like_FMN RVT-GII HNHc FadH CdnL Neighborhood of RT #12 [3991092, 3999207] PRK10416 SMC_prok_B RVT-GII HNHc SMC_prok_B rnc Neighborhood of RT #13 [5213548, 5217494] RVT-GII GIIM DDE_Tnp_1 Neighborhood of RT #14 [5484810, 5488649] UvdE RVT-GII GIIM DDE_Tnp_1 Neighborhood of RT #15 [5607832, 5612507] SrmB RRM_BsYxiN_like RVT-GII GIIM DDE_Tnp_1 Feature: gene Location: 206661-207719 bp Feature: domain Description: DDE_Tnp_1 Location: 207018-207705 bp Feature: domain Description: DDE_Tnp_1 Location: 207018-207705 bp Feature: gene Location: 207871-208050 bp Feature: gene Location: 208200-209531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208509-209148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208509-209148 bp Feature: domain Description: GIIM Note: maturase Location: 209223-209448 bp Feature: domain Description: GIIM Note: maturase Location: 209223 -209448 bp Feature: gene Location: 209756-210067 bp Feature: gene Location: 210230-210565 bp Feature: domain Description: DppB Location: 210233-210560 bp Feature: domain Description: DppB Location: 21023 3 -210560 bp Feature: gene Location: 691588-692658 bp Feature: domain Description: DDE_Tnp_1 Location: 691957-692644 bp Feature: domain Description: DDE_Tnp_1 Location: 691957-692644 bp Feature: gene Location: 692810-692989 bp Feature: gene Location: 693139-694470 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 693448-694087 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 693 448-694087 bp Feature: domain Description: GIIM Note: maturase Location: 694162-694387 bp Feature: domain Description: GIIM Note: maturase Location: 694162-6943 87 bp Feature: gene Location: 694695-695006 bp Feature: gene Location: 695226-695612 bp Feature: domain Description: VOC_Bs_YwkD_like Location: 695241-695607 bp Feature: domain Description: VOC_Bs_YwkD_like Location: 695241-695607 bp Feature: gene Location: 793506-794576 bp Feature: domain Description: DDE_Tnp_1 Location: 793875-794562 bp Feature: domain Description: DDE_Tnp_1 Location: 793 875-794562 bp Feature: gene Location: 794728-794907 bp Feature: gene Location: 795057-796388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 795366-796005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7953 66-796005 bp Feature: domain Description: GIIM Note: maturase Location: 796080-796305 bp Feature: domain Description: GIIM Note: maturase Location: 796080-7963 05 bp Feature: gene Location: 796613-796924 bp Feature: gene Location: 796932-797195 bp Feature: gene Location: 1085009-1085365 bp Feature: domain Description: DDE_Tnp_1 Location: 1085165-1085351 bp Feature: domain Description: DDE_Tnp_1 Location: 1085165-10853 51 bp Feature: gene Location: 1085517-1085696 bp Feature: gene Location: 1085846-1087177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1086155-1086794 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1086155-1086794 bp Feature: domain Description: GIIM Note: maturase Location: 1086869-1087094 bp Feature: domain Description: GIIM Note: maturase Location: 1086869-1087094 bp Feature: gene Location: 1087453-1087710 bp Feature: gene Location: 1088011-1088403 bp Feature: gene Location: 2098160-2099230 bp Feature: domain Description: DDE_Tnp_1 Location: 2098529-2099216 bp Feature: domain Description: DDE_Tnp_1 Location: 2098529-2099216 bp Feature: gene Location: 2099382-2099561 bp Feature: gene Location: 2099711-2101042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2100020-2100659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2100020-2100659 bp Feature: domain Description: GIIM Note: maturase Location: 2100734-2100959 bp Feature: domain Description: GIIM Note: maturase Location: 210073 4-2100959 bp Feature: gene Location: 2101267-2101578 bp Feature: gene Location: 2101874-2102533 bp Feature: domain Description: CC3_like_SDR_a Location: 2101889-2102519 bp Feature: domain Description: CC3 _like_SDR_a Location: 2101889-2102519 bp Feature: gene Location: 2164037-2165107 bp Feature: domain Description: DDE_Tnp_1 Location: 2164406-2165093 bp Feature: domain Description: DDE_Tnp_1 Location: 2164406-2165093 bp Feature: gene Location: 2165259-2165438 bp Feature: gene Location: 2165588-2166919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2165897-2166536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2165897-216653 6 bp Feature: domain Description: GIIM Note: maturase Location: 2166611-2166836 bp Feature: domain Description: GIIM Note: maturase Location: 2166611-216683 6 bp Feature: gene Location: 2167144-2167455 bp Feature: gene Location: 2167463-2167726 bp Feature: gene Location: 2631382-2631516 bp Feature: gene Location: 2631737-2632318 bp Feature: domain Description: Lysozyme_like Location: 2631872-2632307 bp Feature: domain Description: Lysozyme_like Location: 263 1872-263 23 07 bp Feature: gene Location: 2632894-2634717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2633158-2633992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 263 3 158-263 3 992 bp Feature: domain Description: Intron_maturas2 Location: 2634061-2634400 bp Feature: domain Description: Intron_maturas2 Location: 263 4061-263 4400 bp Feature: domain Description: HNHc Note: nucleases Location: 2634538-2634694 bp Feature: domain Description: HNHc Note: nucleases Location: 263 453 8-263 4694 bp Feature: gene Location: 2634719-2634850 bp Feature: gene Location: 2635214-2635720 bp Feature: domain Description: RimL Location: 2635223-2635718 bp Feature: domain Description: RimL Location: 263 5223 -263 5718 bp Feature: gene Location: 3269347-3270993 bp Feature: domain Description: Uup Location: 3269374-3269605 bp Feature: domain Description: Uup Location: 3 2693 74-3 269605 bp Feature: domain Description: Uup Location: 3269620-3270829 bp Feature: domain Description: Uup Location: 3 269620-3 270829 bp Feature: gene Location: 3271427-3272092 bp Feature: domain Description: HATPase_BceS-YxdK-YvcQ-like Location: 3271757-3272081 bp Feature: domain Description: HATPase_BceS-YxdK-YvcQ-like Location: 3 271757-3 272081 bp Feature: gene Location: 3272286-3274055 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3272544-3273240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 272544-3 273 240 bp Feature: domain Description: HNHc Note: nucleases Location: 3273801-3273939 bp Feature: domain Description: HNHc Note: nucleases Location: 3 273 801-3 273 93 9 bp Feature: gene Location: 3274765-3275016 bp Feature: gene Location: 3275013-3275720 bp Feature: domain Description: OmpR Location: 3275022-3275691 bp Feature: domain Description: OmpR Location: 3 275022-3 275691 bp Feature: gene Location: 3369689-3369913 bp Feature: domain Description: DUF2187 Location: 3369713-3369875 bp Feature: domain Description: DUF2187 Location: 3 3 69713 -3 3 69875 bp Feature: gene Location: 3370173-3370484 bp Feature: gene Location: 3370709-3372040 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3371018-3371657 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 71018-3 3 71657 bp Feature: domain Description: GIIM Note: maturase Location: 3371732-3371957 bp Feature: domain Description: GIIM Note: maturase Location: 3 3 7173 2-3 3 71957 bp Feature: gene Location: 3372190-3372369 bp Feature: gene Location: 3372521-3373591 bp Feature: domain Description: DDE_Tnp_1 Location: 3372890-3373577 bp Feature: domain Description: DDE_Tnp_1 Location: 3 3 72890-3 3 73 577 bp Feature: gene Location: 3614776-3615771 bp Feature: domain Description: COG4584 Location: 3615238-3615628 bp Feature: domain Description: COG4584 Location: 3 61523 8-3 615628 bp Feature: gene Location: 3615882-3616193 bp Feature: gene Location: 3616418-3617749 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3616727-3617366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 616727-3 6173 66 bp Feature: domain Description: GIIM Note: maturase Location: 3617441-3617666 bp Feature: domain Description: GIIM Note: maturase Location: 3 617441-3 617666 bp Feature: gene Location: 3617899-3618078 bp Feature: gene Location: 3618230-3619300 bp Feature: domain Description: DDE_Tnp_1 Location: 3618599-3619286 bp Feature: domain Description: DDE_Tnp_1 Location: 3 618599-3 619286 bp Feature: gene Location: 3790765-3792339 bp Feature: domain Description: GltS_FMN Location: 3790912-3792274 bp Feature: domain Description: GltS_FMN Location: 3 790912-3 792274 bp Feature: gene Location: 3792407-3793366 bp Feature: domain Description: OYE_like_FMN Location: 3792458-3793337 bp Feature: domain Description: OYE_like_FMN Location: 3 792458-3 793 3 3 7 bp Feature: gene Location: 3793393-3795186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3793651-3794347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 793 651-3 7943 47 bp Feature: domain Description: HNHc Note: nucleases Location: 3794908-3795046 bp Feature: domain Description: HNHc Note: nucleases Location: 3 794908-3 795046 bp Feature: gene Location: 3795885-3796139 bp Feature: domain Description: FadH Location: 3795972-3796104 bp Feature: domain Description: FadH Location: 3 795972-3 796104 bp Feature: gene Location: 3796701-3797204 bp Feature: domain Description: CdnL Location: 3796746-3797199 bp Feature: domain Description: CdnL Location: 3 796746-3 797199 bp Feature: gene Location: 3991092-3992081 bp Feature: domain Description: PRK10416 Location: 3991116-3992058 bp Feature: domain Description: PRK10416 Location: 3 991116-3 992058 bp Feature: gene Location: 3992097-3994958 bp Feature: domain Description: SMC_prok_B Location: 3992103-3994926 bp Feature: domain Description: SMC_prok_B Location: 3 992103 -3 994926 bp Feature: gene Location: 3995302-3997071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3995560-3996256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 995560-3 996256 bp Feature: domain Description: HNHc Note: nucleases Location: 3996817-3996955 bp Feature: domain Description: HNHc Note: nucleases Location: 3 996817-3 996955 bp Feature: gene Location: 3997781-3998272 bp Feature: domain Description: SMC_prok_B Location: 3997787-3998255 bp Feature: domain Description: SMC_prok_B Location: 3 997787-3 998255 bp Feature: gene Location: 3998419-3999207 bp Feature: domain Description: rnc Location: 3998521-3999199 bp Feature: domain Description: rnc Location: 3 998521-3 999199 bp Feature: gene Location: 5213548-5213868 bp Feature: gene Location: 5214076-5214387 bp Feature: gene Location: 5214612-5215943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5214921-5215560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5214921-5215560 bp Feature: domain Description: GIIM Note: maturase Location: 5215635-5215860 bp Feature: domain Description: GIIM Note: maturase Location: 521563 5-5215860 bp Feature: gene Location: 5216093-5216272 bp Feature: gene Location: 5216424-5217494 bp Feature: domain Description: DDE_Tnp_1 Location: 5216793-5217480 bp Feature: domain Description: DDE_Tnp_1 Location: 5216793 -5217480 bp Feature: gene Location: 5484810-5485148 bp Feature: domain Description: UvdE Location: 5484849-5485110 bp Feature: domain Description: UvdE Location: 5484849-5485110 bp Feature: gene Location: 5485231-5485542 bp Feature: gene Location: 5485767-5487098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5486076-5486715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5486076-5486715 bp Feature: domain Description: GIIM Note: maturase Location: 5486790-5487015 bp Feature: domain Description: GIIM Note: maturase Location: 5486790-5487015 bp Feature: gene Location: 5487248-5487427 bp Feature: gene Location: 5487579-5488649 bp Feature: domain Description: DDE_Tnp_1 Location: 5487948-5488635 bp Feature: domain Description: DDE_Tnp_1 Location: 5487948-548863 5 bp Feature: gene Location: 5607832-5608881 bp Feature: domain Description: SrmB Location: 5607838-5608648 bp Feature: domain Description: SrmB Location: 560783 8-5608648 bp Feature: domain Description: RRM_BsYxiN_like Location: 5608657-5608870 bp Feature: domain Description: RRM_BsYxiN_like Location: 5608657-5608870 bp Feature: gene Location: 5609101-5609412 bp Feature: gene Location: 5609637-5610968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5609946-5610585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5609946-5610585 bp Feature: domain Description: GIIM Note: maturase Location: 5610660-5610885 bp Feature: domain Description: GIIM Note: maturase Location: 5610660-5610885 bp Feature: gene Location: 5611118-5611297 bp Feature: gene Location: 5611449-5612507 bp Feature: domain Description: DDE_Tnp_1 Location: 5611806-5612493 bp Feature: domain Description: DDE_Tnp_1 Location: 5611806-5612493 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, GIIM (pfam08388), DppB (COG0601), VOC_Bs_YwkD_like (cd08352), CC3_like_SDR_a (cd05250), Lysozyme_like (pfam13702), Intron_maturas2 (pfam01348), HNHc (smart00507), RimL (COG1670)
Uup (COG0488), HATPase_BceS-YxdK-YvcQ-like (cd16948), OmpR (COG0745), DUF2187 (pfam09953), COG4584 (Transposase ), GltS_FMN (cd02808), OYE_like_FMN (cd02933), FadH (COG1902), CdnL (COG1329), PRK10416 (signal recognition particle-docking protein FtsY; Provisional)
SMC_prok_B (TIGR02168), rnc (PRK00102), UvdE (pfam03851), SrmB (COG0513), RRM_BsYxiN_like (cd12500)