myRT

myRT report for GCA_002914425.1_ASM291442v1

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Seq: PPXO01000100.1 Candidatus Entotheonella serta strain TSWA1 NODE_101, whole genome shotgun sequence (13713 bp)
Overview 1 RT 1: 570-6372 bp Neighborhood of RT #1 [570, 6372] R1-I-EN RVT-CRISPR-like Rnase_HI_RT_non_LTR Feature: gene Location: 570-935 bp Feature: gene Location: 1376-1672 bp Feature: gene Location: 1795-5529 bp Feature: domain Description: R1-I-EN Location: 1843-2461 bp Feature: domain Description: R1 -I-EN Location: 1 843-2461 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 3463-3931 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 3463-3931 bp Feature: domain Description: Rnase_HI_RT_non_LTR Location: 4696-5074 bp Feature: domain Description: Rnase_HI_RT_non_LTR Location: 4696-5074 bp Feature: gene Location: 5443-6117 bp Feature: gene Location: 6172-6372 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT R1-I-EN (cd09077), RVT-CRISPR, Rnase_HI_RT_non_LTR (cd09276)

Seq: PPXO01001094.1 Candidatus Entotheonella serta strain TSWA1 NODE_1107, whole genome shotgun sequence (2186 bp)
Overview 1 RT 1: 119-1972 bp Neighborhood of RT #1 [119, 1972] RVT-GII Feature: gene Location: 119-1063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 488-1058 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 488-1058 bp Feature: gene Location: 1044-1757 bp Feature: gene Location: 1754-1972 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PPXO01001623.1 Candidatus Entotheonella serta strain TSWA1 NODE_1653, whole genome shotgun sequence (933 bp)
Overview 1 RT 1: 3-933 bp Neighborhood of RT #1 [3, 932] RVT-GII GIIM Feature: gene Location: 3-932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69-711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69-711 bp Feature: domain Description: GIIM Note: maturase Location: 783-933 bp Feature: domain Description: GIIM Note: maturase Location: 783 -93 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PPXO01000233.1 Candidatus Entotheonella serta strain TSWA1 NODE_237, whole genome shotgun sequence (9307 bp)
Overview 1 RT 1: 2-4350 bp Neighborhood of RT #1 [2, 4379] RVT-GII TenA PRK05443 PRK05443 Feature: gene Location: 2-361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68-317 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68-317 bp Feature: gene Location: 585-1250 bp Feature: domain Description: TenA Location: 591-1233 bp Feature: domain Description: TenA Location: 591-1233 bp Feature: gene Location: 2151-4379 bp Feature: domain Description: PRK05443 Location: 2196-3009 bp Feature: domain Description: PRK054 4 3 Location: 2196-3009 bp Feature: domain Description: PRK05443 Location: 3009-4350 bp Feature: domain Description: PRK054 4 3 Location: 3009-4 350 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, TenA (COG0819), PRK05443 (polyphosphate kinase; Provisional)

Seq: PPXO01000342.1 Candidatus Entotheonella serta strain TSWA1 NODE_346, whole genome shotgun sequence (7191 bp)
Overview 1 RT 1: 1187-6943 bp Neighborhood of RT #1 [1187, 6943] DprA_WH SWIM RVT-Retrons WGR_DNA_ligase HEAT_2 Feature: gene Location: 1187-1633 bp Feature: gene Location: 1664-2569 bp Feature: domain Description: DprA_WH Location: 2096-2198 bp Feature: domain Description: DprA_WH Location: 2096-2198 bp Feature: domain Description: SWIM Location: 2453-2546 bp Feature: domain Description: SWIM Location: 245 3-25 46 bp Feature: gene Location: 2662-4308 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3457-4072 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 345 7-4072 bp Feature: gene Location: 4336-5976 bp Feature: domain Description: WGR_DNA_ligase Location: 4351-4576 bp Feature: domain Description: WGR_DNA_ligase Location: 435 1-45 76 bp Feature: domain Description: HEAT_2 Location: 4786-4993 bp Feature: domain Description: HEAT_2 Location: 4786-4993 bp Feature: gene Location: 5438-6943 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DprA_WH (pfam17782), SWIM (pfam04434), RVT-Retrons, WGR_DNA_ligase (cd07998), HEAT_2 (pfam13646)

Seq: PPXO01000364.1 Candidatus Entotheonella serta strain TSWA1 NODE_369, whole genome shotgun sequence (6870 bp)
Overview 1 RT 1: 5539-6721 bp Neighborhood of RT #1 [5539, 6867] Slp CutA1 RVT-GII Feature: gene Location: 5539-5775 bp Feature: domain Description: Slp Location: 5608-5752 bp Feature: domain Description: Slp Location: 56 08-5752 bp Feature: gene Location: 5778-5990 bp Feature: domain Description: CutA1 Location: 5784-5964 bp Feature: domain Description: CutA1 Location: 5784-596 4 bp Feature: gene Location: 5992-6867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6100-6721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 100-6 721 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Slp (pfam03843), CutA1 (pfam03091), RVT-GII

Seq: PPXO01000474.1 Candidatus Entotheonella serta strain TSWA1 NODE_481, whole genome shotgun sequence (5649 bp)
Overview 1 RT 1: 3-5642 bp Neighborhood of RT #1 [3, 5647] DUF4096 RVT-GII DUF29 RVT-GII GIIM RVT-GII GIIM DUF4096 Feature: gene Location: 3-260 bp Feature: domain Description: DUF4096 Location: 36-255 bp Feature: domain Description: DUF4096 Location: 36-255 bp Feature: gene Location: 397-591 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 403-580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 403-580 bp Feature: gene Location: 792-1247 bp Feature: domain Description: DUF29 Location: 807-1221 bp Feature: domain Description: DUF29 Location: 807 -1221 bp Feature: gene Location: 1368-1694 bp Feature: gene Location: 1831-1977 bp Feature: gene Location: 1984-3363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2302-2917 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2302-2917 bp Feature: domain Description: GIIM Note: maturase Location: 2965-3178 bp Feature: domain Description: GIIM Note: maturase Location: 2965-317 8 bp Feature: gene Location: 4030-4170 bp Feature: gene Location: 4321-5253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4327-4957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4327 -4957 bp Feature: domain Description: GIIM Note: maturase Location: 5038-5251 bp Feature: domain Description: GIIM Note: maturase Location: 5038-5251 bp Feature: gene Location: 5390-5647 bp Feature: domain Description: DUF4096 Location: 5423-5642 bp Feature: domain Description: DUF4096 Location: 5423-5642 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4096 (pfam13340), RVT-GII, DUF29 (pfam01724), GIIM (pfam08388)

Seq: PPXO01000667.1 Candidatus Entotheonella serta strain TSWA1 NODE_677, whole genome shotgun sequence (4160 bp)
Overview 1 RT 1: 1-2982 bp Neighborhood of RT #1 [1, 2982] RVT_N RVT-GII GIIM HNHc TRX_Fd_family Feature: gene Location: 1-198 bp Feature: gene Location: 305-694 bp Feature: domain Description: RVT_N Location: 350-596 bp Feature: domain Description: RVT_N Location: 350-596 bp Feature: gene Location: 707-2017 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 710-1280 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 710-128 0 bp Feature: domain Description: GIIM Note: maturase Location: 1358-1586 bp Feature: domain Description: GIIM Note: maturase Location: 1358 -158 6 bp Feature: domain Description: HNHc Note: nucleases Location: 1781-1892 bp Feature: domain Description: HNHc Note: nucleases Location: 178 1-18 92 bp Feature: gene Location: 2254-2616 bp Feature: domain Description: TRX_Fd_family Location: 2290-2497 bp Feature: domain Description: TRX_Fd_family Location: 2290-2497 bp Feature: gene Location: 2650-2982 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), TRX_Fd_family (cd02980)

Seq: PPXO01000691.1 Candidatus Entotheonella serta strain TSWA1 NODE_701, whole genome shotgun sequence (4038 bp)
Overview 1 RT 1: 3-2665 bp Neighborhood of RT #1 [3, 2820] RVT-GII GIIM CcmA ABC2_membrane Feature: gene Location: 3-710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69-489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69 -489 bp Feature: domain Description: GIIM Note: maturase Location: 561-711 bp Feature: domain Description: GIIM Note: maturase Location: 561-711 bp Feature: gene Location: 956-1741 bp Feature: domain Description: CcmA Location: 983-1634 bp Feature: domain Description: CcmA Location: 9 83-1634 bp Feature: gene Location: 1738-2820 bp Feature: domain Description: ABC2_membrane Location: 2188-2665 bp Feature: domain Description: ABC2_membrane Location: 2188-2665 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), CcmA (COG4133), ABC2_membrane (pfam01061)

Seq: PPXO01000822.1 Candidatus Entotheonella serta strain TSWA1 NODE_833, whole genome shotgun sequence (3246 bp)
Overview 1 RT 1: 1439-2896 bp Neighborhood of RT #1 [1439, 3141] RVT-UG4 Feature: gene Location: 1439-1654 bp Feature: gene Location: 1703-2059 bp Feature: gene Location: 2083-3141 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2446-2896 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2446-2896 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4

Seq: PPXO01000084.1 Candidatus Entotheonella serta strain TSWA1 NODE_84, whole genome shotgun sequence (15268 bp)
Overview 1 RT 1: 3129-6573 bp Neighborhood of RT #1 [3129, 6573] LPLAT_AGPAT-like GpsA RVT-GII Feature: gene Location: 3129-5207 bp Feature: domain Description: LPLAT_AGPAT-like Location: 3426-3990 bp Feature: domain Description: LPLAT_AGPAT-like Location: 3426-3990 bp Feature: domain Description: GpsA Location: 4218-5178 bp Feature: domain Description: GpsA Location: 4218-5178 bp Feature: gene Location: 5220-5405 bp Feature: gene Location: 5353-5652 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5401-5554 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5401-5554 bp Feature: gene Location: 5884-6273 bp Feature: gene Location: 6394-6573 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LPLAT_AGPAT-like (cd07989), GpsA (COG0240), RVT-GII

Seq: PPXO01000944.1 Candidatus Entotheonella serta strain TSWA1 NODE_956, whole genome shotgun sequence (2441 bp)
Overview 1 RT 1: 1-1780 bp Neighborhood of RT #1 [1, 2289] RVT-CRISPR-like Rnase_HI_RT_non_LTR Feature: gene Location: 1-2289 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 76-724 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 76-724 bp Feature: domain Description: Rnase_HI_RT_non_LTR Location: 1396-1780 bp Feature: domain Description: Rnase_HI_RT_non_LTR Location: 1396-1780 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Rnase_HI_RT_non_LTR (cd09276)