myRT

myRT report for GCA_002914585.1_ASM291458v1

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Seq: PDDM01000020.1 Pseudanabaena sp. BC1403 Ga0079977_120, whole genome shotgun sequence (105825 bp)
Overview 1 RT 1: 35139-41288 bp Neighborhood of RT #1 [35139, 41617] BchE RVT-Retrons WGR PQQ PQQ WGR PQQ Feature: gene Location: 35139-36671 bp Feature: domain Description: BchE Location: 35145-36600 bp Feature: domain Description: BchE Location: 351 45-36600 bp Feature: gene Location: 36775-36963 bp Feature: gene Location: 37103-38539 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37649-38267 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37649-38267 bp Feature: gene Location: 38550-40001 bp Feature: domain Description: WGR Location: 38565-38805 bp Feature: domain Description: WGR Location: 38565-38805 bp Feature: domain Description: PQQ Location: 38877-39426 bp Feature: domain Description: PQQ Location: 38877-39426 bp Feature: domain Description: PQQ Location: 39501-39684 bp Feature: domain Description: PQQ Location: 39501 -39684 bp Feature: gene Location: 40193-41617 bp Feature: domain Description: WGR Location: 40214-40454 bp Feature: domain Description: WGR Location: 4021 4-40454 bp Feature: domain Description: PQQ Location: 40460-41288 bp Feature: domain Description: PQQ Location: 40460-41 288 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BchE (TIGR02026), RVT-Retrons, WGR (smart00773), PQQ (smart00564)

Seq: PDDM01000040.1 Pseudanabaena sp. BC1403 Ga0079977_140, whole genome shotgun sequence (32518 bp)
Overview 1 RT 1: 18169-23006 bp Neighborhood of RT #1 [18169, 23065] PemK_toxin RVT-AbiP2 Gtr1_RagA MATE_tuaB_like GT4_PimA-like Feature: gene Location: 18169-18501 bp Feature: domain Description: PemK_toxin Location: 18175-18487 bp Feature: domain Description: PemK_toxin Location: 18175-18487 bp Feature: gene Location: 18522-18788 bp Feature: gene Location: 19146-20672 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 19602-20058 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 19602 -2 0058 bp Feature: domain Description: Gtr1_RagA Location: 20238-20658 bp Feature: domain Description: Gtr1_RagA Location: 2 02 38-2 0658 bp Feature: gene Location: 20793-22091 bp Feature: domain Description: MATE_tuaB_like Location: 20850-22041 bp Feature: domain Description: MATE_tuaB_like Location: 2 0850-2 2 041 bp Feature: gene Location: 22064-23065 bp Feature: domain Description: GT4_PimA-like Location: 22211-23006 bp Feature: domain Description: GT4_PimA-like Location: 2 2 2 11-2 3006 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PemK_toxin (pfam02452), RVT-AbiP2, Gtr1_RagA (pfam04670), MATE_tuaB_like (cd13127), GT4_PimA-like (cd03801)

Seq: PDDM01000063.1 Pseudanabaena sp. BC1403 Ga0079977_163, whole genome shotgun sequence (2180 bp)
Overview 1 RT 1: 13-2063 bp Neighborhood of RT #1 [13, 2092] RVT_N RVT-GII GIIM McrA Feature: gene Location: 13-201 bp Feature: gene Location: 548-2092 bp Feature: domain Description: RVT_N Location: 584-824 bp Feature: domain Description: RVT_N Location: 584-824 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 881-1508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 881-1508 bp Feature: domain Description: GIIM Note: maturase Location: 1565-1706 bp Feature: domain Description: GIIM Note: maturase Location: 1565-1706 bp Feature: domain Description: McrA Location: 1742-2063 bp Feature: domain Description: McrA Location: 1742-2063 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)