myRT

myRT report for GCA_002914965.1_ASM291496v1

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Seq: NIGV01000010.1 Lactobacillus plantarum strain LMG S-29189 contig000010, whole genome shotgun sequence (55173 bp)
Overview 1 RT 1: 32123-35363 bp Neighborhood of RT #1 [32123, 35363] gpmA RVT-Retrons Feature: gene Location: 32123-32338 bp Feature: domain Description: gpmA Location: 32126-32330 bp Feature: domain Description: gpmA Location: 321 26-32330 bp Feature: gene Location: 32628-33611 bp Feature: gene Location: 33684-34628 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 33813-34359 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3381 3-34359 bp Feature: gene Location: 34930-35082 bp Feature: gene Location: 35235-35363 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT gpmA (PRK14120), RVT-Retrons

Seq: NIGV01000014.1 Lactobacillus plantarum strain LMG S-29189 contig000014, whole genome shotgun sequence (32876 bp)
Overview 1 RT 1: 8817-12800 bp Neighborhood of RT #1 [8817, 12800] HTH_ARSR DDE_Tnp_Tn3 RVT-GII GIIM PRK09564 Feature: gene Location: 8817-9170 bp Feature: domain Description: HTH_ARSR Location: 8877-9090 bp Feature: domain Description: HTH_ARSR Location: 8877-9090 bp Feature: gene Location: 9376-9717 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 9382-9649 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 9382 -9649 bp Feature: gene Location: 9968-10783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9971-10337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9971-10337 bp Feature: domain Description: GIIM Note: maturase Location: 10391-10619 bp Feature: domain Description: GIIM Note: maturase Location: 10391-10619 bp Feature: gene Location: 10918-12282 bp Feature: domain Description: PRK09564 Location: 10933-12256 bp Feature: domain Description: PRK09564 Location: 10933-12 2 56 bp Feature: gene Location: 12414-12800 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09564 (coenzyme A disulfide reductase; Reviewed), HTH_ARSR (smart00418), DDE_Tnp_Tn3 (pfam01526), RVT-GII, GIIM (pfam08388)