myRT

myRT report for GCA_002915295.1_ASM291529v1

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Seq: PQCR01000001.1 Clostridium sp. 2-1 scaffold1, whole genome shotgun sequence (246790 bp)
Overview 1 RT 1: 31790-39088 bp Neighborhood of RT #1 [31790, 39090] MrcB PepSY RVT-GII ndk PRK14420 Feature: gene Location: 31790-34264 bp Feature: domain Description: MrcB Location: 31820-34226 bp Feature: domain Description: MrcB Location: 31 820-34226 bp Feature: gene Location: 34360-35094 bp Feature: domain Description: PepSY Location: 34825-35053 bp Feature: domain Description: PepSY Location: 34825-35053 bp Feature: gene Location: 36385-37299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36640-37264 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36640-37264 bp Feature: gene Location: 37973-38380 bp Feature: domain Description: ndk Location: 37979-38375 bp Feature: domain Description: ndk Location: 37979-38375 bp Feature: gene Location: 38818-39090 bp Feature: domain Description: PRK14420 Location: 38821-39088 bp Feature: domain Description: PRK1 4420 Location: 38821 -39088 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MrcB (COG0744), PepSY (pfam03413), RVT-GII, ndk (PRK00668), PRK14420 (acylphosphatase; Provisional)

Seq: PQCR01000148.1 Clostridium sp. 2-1 scaffold148, whole genome shotgun sequence (3311 bp)
Overview 1 RT 1: 2-3305 bp Neighborhood of RT #1 [2, 3310] PRK06921 RVT-GII HNHc AbrB Feature: gene Location: 2-232 bp Feature: domain Description: PRK06921 Location: 17-200 bp Feature: domain Description: PRK0692 1 Location: 17-2 00 bp Feature: gene Location: 969-2735 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1239-1938 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 39-1938 bp Feature: domain Description: HNHc Note: nucleases Location: 2511-2613 bp Feature: domain Description: HNHc Note: nucleases Location: 2 511-2 613 bp Feature: gene Location: 3137-3310 bp Feature: domain Description: AbrB Location: 3140-3305 bp Feature: domain Description: AbrB Location: 3140-3305 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06921 (hypothetical protein; Provisional), RVT-GII, HNHc (smart00507), AbrB (pfam05145)

Seq: PQCR01000084.1 Clostridium sp. 2-1 scaffold84, whole genome shotgun sequence (19749 bp)
Overview 1 RT 1: 2749-6532 bp Neighborhood of RT #1 [2749, 6532] XerC RVT-UG2 COG4185 Feature: gene Location: 2749-2889 bp Feature: gene Location: 2980-3450 bp Feature: domain Description: XerC Location: 2992-3430 bp Feature: domain Description: XerC Location: 2992-3 43 0 bp Feature: gene Location: 3989-5302 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 4181-5003 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 4181-5003 bp Feature: gene Location: 5793-6359 bp Feature: domain Description: COG4185 Location: 5796-6351 bp Feature: domain Description: COG4185 Location: 5796-63 51 bp Feature: gene Location: 6359-6532 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XerC (COG4973), RVT-UG2, COG4185 (Predicted ABC-type ATPase )