myRT

myRT report for GCA_002915375.1_ASM291537v1

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Seq: PQDM01000015.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SA_078 NODE_15_length_112911_cov_108.098, whole genome shotgun sequence (112911 bp)
Overview 1 RT 1: 28204-31386 bp Neighborhood of RT #1 [28204, 31386] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 28204-28395 bp Feature: gene Location: 28466-28600 bp Feature: gene Location: 28673-30340 bp Feature: RT Description: RVT_N Location: 28721-28958 bp Feature: RT Description: RVT_N Location: 28721 -28958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29009-29651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29009-29651 bp Feature: domain Description: GIIM Note: maturase Location: 29702-29936 bp Feature: domain Description: GIIM Note: maturase Location: 29702-29936 bp Feature: domain Description: HNHc Note: nucleases Location: 30146-30305 bp Feature: domain Description: HNHc Note: nucleases Location: 301 46-30305 bp Feature: gene Location: 30620-30802 bp Feature: gene Location: 31054-31386 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: PQDM01000023.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SA_078 NODE_23_length_81626_cov_43.8074, whole genome shotgun sequence (81626 bp)
Overview 1 RT 1: 31944-36869 bp Neighborhood of RT #1 [31944, 36877] INT_P4_C RVT-Retrons PRK10473 Feature: gene Location: 31944-32666 bp Feature: domain Description: INT_P4_C Location: 32064-32595 bp Feature: domain Description: INT_P4_C Location: 32 064-32 595 bp Feature: gene Location: 32991-33953 bp Feature: gene Location: 33953-34888 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34064-34649 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34064-34649 bp Feature: gene Location: 35136-35345 bp Feature: gene Location: 35690-36877 bp Feature: domain Description: PRK10473 Location: 35693-36869 bp Feature: domain Description: PRK10473 Location: 35693-36869 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), RVT-Retrons, PRK10473 (MdtL family multidrug efflux MFS transporter)

Seq: PQDM01000045.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SA_078 NODE_45_length_19407_cov_39.6003, whole genome shotgun sequence (19407 bp)
Overview 1 RT 1: 15413-19406 bp Neighborhood of RT #1 [15413, 19406] umuC PRK10276 RVT-GII Feature: gene Location: 15413-16684 bp Feature: domain Description: umuC Location: 15416-16676 bp Feature: domain Description: umuC Location: 15416-16676 bp Feature: gene Location: 16684-17496 bp Feature: domain Description: PRK10276 Location: 17116-17479 bp Feature: domain Description: PRK10276 Location: 17116-17479 bp Feature: gene Location: 17521-19008 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17926-18616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17926-18616 bp Feature: gene Location: 19131-19406 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII