myRT

myRT report for GCA_002915405.1_ASM291540v1

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Seq: PQDK01000017.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SA_041 NODE_17_length_81779_cov_67.2202, whole genome shotgun sequence (81779 bp)
Overview 1 RT 1: 31869-36794 bp Neighborhood of RT #1 [31869, 36802] INT_P4_C RVT-Retrons PRK10473 Feature: gene Location: 31869-32591 bp Feature: domain Description: INT_P4_C Location: 31989-32520 bp Feature: domain Description: INT_P4_C Location: 31 989-32520 bp Feature: gene Location: 32916-33878 bp Feature: gene Location: 33878-34813 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 33989-34574 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 33989-34574 bp Feature: gene Location: 35061-35270 bp Feature: gene Location: 35615-36802 bp Feature: domain Description: PRK10473 Location: 35618-36794 bp Feature: domain Description: PRK1 0473 Location: 3561 8-36794 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), RVT-Retrons, PRK10473 (MdtL family multidrug efflux MFS transporter)

Seq: PQDK01000028.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SA_041 NODE_28_length_22551_cov_85.9246, whole genome shotgun sequence (22551 bp)
Overview 1 RT 1: 17006-21303 bp Neighborhood of RT #1 [17006, 21311] InsE HTH_21 RVT-GII GIIM PHA02517 APH Feature: gene Location: 17006-17311 bp Feature: domain Description: InsE Location: 17009-17234 bp Feature: domain Description: InsE Location: 17009-172 34 bp Feature: gene Location: 17398-17742 bp Feature: domain Description: HTH_21 Location: 17413-17572 bp Feature: domain Description: HTH_2 1 Location: 17413-17572 bp Feature: gene Location: 18334-19857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18607-19339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18607-19339 bp Feature: domain Description: GIIM Note: maturase Location: 19414-19612 bp Feature: domain Description: GIIM Note: maturase Location: 19414-19612 bp Feature: gene Location: 19953-20408 bp Feature: domain Description: PHA02517 Location: 19962-20370 bp Feature: domain Description: PHA02 517 Location: 19962 -2 0370 bp Feature: gene Location: 20508-21311 bp Feature: domain Description: APH Location: 20550-21303 bp Feature: domain Description: APH Location: 2 0550-2 1303 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), HTH_21 (pfam13276), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), APH (pfam01636)