myRT

myRT report for GCA_002916335.1_7969

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Seq: NBAJ01000016.1 Pseudomonas syringae strain 7969 contig_16, whole genome shotgun sequence (113271 bp)
Overview 1 RT 1: 1-2567 bp Neighborhood of RT #1 [1, 2593] RVT-GII InsE TnpB_IS66 Feature: gene Location: 1-129 bp Feature: gene Location: 280-1707 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 964-1654 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 964-1 654 bp Feature: gene Location: 1863-2252 bp Feature: domain Description: InsE Location: 1905-2190 bp Feature: domain Description: InsE Location: 1 905-21 90 bp Feature: gene Location: 2249-2593 bp Feature: domain Description: TnpB_IS66 Location: 2276-2567 bp Feature: domain Description: TnpB_IS66 Location: 2276-2567 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, InsE (COG2963), TnpB_IS66 (pfam05717)

Seq: NBAJ01000004.1 Pseudomonas syringae strain 7969 contig_4, whole genome shotgun sequence (261985 bp)
Overview 1 RT 1: 224478-231974 bp 2 RT 2: 256147-259398 bp Neighborhood of RT #1 [224478, 231979] xerC RVT-GII RVT-GII GIIM Dabb XylH Neighborhood of RT #2 [256147, 259398] HTH_ARAC RVT-GII ArdC Feature: gene Location: 224478-225782 bp Feature: domain Description: xerC Location: 224967-225717 bp Feature: domain Description: xerC Location: 2 2 4967-2 2 5717 bp Feature: gene Location: 225917-226300 bp Feature: gene Location: 226981-228270 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 227665-228208 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 7665-2 2 82 08 bp Feature: gene Location: 229113-229964 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 229116-229359 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 9116-2 2 9359 bp Feature: domain Description: GIIM Note: maturase Location: 229413-229644 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 9413-2 2 9644 bp Feature: gene Location: 230447-230752 bp Feature: domain Description: Dabb Location: 230453-230741 bp Feature: domain Description: Dabb Location: 2 30453-2 30741 bp Feature: gene Location: 230789-231979 bp Feature: domain Description: XylH Location: 230840-231974 bp Feature: domain Description: XylH Location: 2 30840-2 31974 bp Feature: gene Location: 256147-256833 bp Feature: gene Location: 256871-257095 bp Feature: domain Description: HTH_ARAC Location: 256877-257087 bp Feature: domain Description: HTH_ARAC Location: 2 56877-2 57087 bp Feature: gene Location: 257689-258225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 257698-258031 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 57698-2 58031 bp Feature: gene Location: 258392-259069 bp Feature: domain Description: ArdC Location: 258482-259034 bp Feature: domain Description: ArdC Location: 2 58482 -2 59034 bp Feature: gene Location: 259204-259398 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT xerC (PRK01287), RVT-GII, GIIM (pfam08388), Dabb (smart00886), XylH (COG4214), HTH_ARAC (smart00342), ArdC (COG4227)

Seq: NBAJ01000085.1 Pseudomonas syringae strain 7969 contig_85, whole genome shotgun sequence (646 bp)
Overview 1 RT 1: 1-632 bp Neighborhood of RT #1 [1, 643] RVT-CRISPR-like RVT-CRISPR-like Feature: gene Location: 1-183 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 10-184 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 10-184 bp Feature: gene Location: 203-643 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 404-632 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 404-63 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: NBAJ01000009.1 Pseudomonas syringae strain 7969 contig_9, whole genome shotgun sequence (200804 bp)
Overview 1 RT 1: 361-8225 bp Neighborhood of RT #1 [361, 8242] RVT-Retrons COG4889 Feature: gene Location: 361-1158 bp Feature: gene Location: 1325-1555 bp Feature: gene Location: 1567-2613 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1702-2272 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1702-2272 bp Feature: gene Location: 2689-2928 bp Feature: gene Location: 3338-8242 bp Feature: domain Description: COG4889 Location: 3341-8225 bp Feature: domain Description: COG4 889 Location: 334 1-8225 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, COG4889 (Predicted helicase )