myRT

myRT report for GCA_002916665.1_ASM291666v1

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Seq: PQDJ01000141.1 Escherichia coli strain RDP19 NODE_166_length_52243_cov_35.373524, whole genome shotgun sequence (52315 bp)
Overview 1 RT 1: 1-5412 bp Neighborhood of RT #1 [1, 5510] RhsA RVT-GII group_II_RT_mat YhhI YhhI YhhI Feature: gene Location: 1-1830 bp Feature: domain Description: RhsA Location: 7-1396 bp Feature: domain Description: RhsA Location: 7-1 396 bp Feature: gene Location: 2195-2422 bp Feature: gene Location: 2673-3752 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3144-3735 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 44-3735 bp Feature: gene Location: 3774-4025 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3780-4008 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3780-4008 bp Feature: gene Location: 4389-5510 bp Feature: domain Description: YhhI Location: 4395-4740 bp Feature: domain Description: YhhI Location: 4395-4740 bp Feature: domain Description: YhhI Location: 4797-5151 bp Feature: domain Description: YhhI Location: 4797-51 51 bp Feature: domain Description: YhhI Location: 5172-5412 bp Feature: domain Description: YhhI Location: 51 72-541 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RhsA (COG3209), RVT-GII, group_II_RT_mat (TIGR04416), YhhI (COG5433)

Seq: PQDJ01000142.1 Escherichia coli strain RDP19 NODE_167_length_6503_cov_45.076271, whole genome shotgun sequence (6575 bp)
Overview 1 RT 1: 2141-6141 bp Neighborhood of RT #1 [2141, 6149] DcuC RVT-GII Asparaginase_2 Feature: gene Location: 2141-3502 bp Feature: domain Description: DcuC Location: 2144-3476 bp Feature: domain Description: DcuC Location: 2 144-3476 bp Feature: gene Location: 3555-3926 bp Feature: gene Location: 4148-4594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4454-4556 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4454-4556 bp Feature: gene Location: 4642-4791 bp Feature: gene Location: 5118-6149 bp Feature: domain Description: Asparaginase_2 Location: 5208-6141 bp Feature: domain Description: Asparaginase_2 Location: 52 08-6141 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DcuC (TIGR00771), RVT-GII, Asparaginase_2 (pfam01112)

Seq: PQDJ01000032.1 Escherichia coli strain RDP19 NODE_32_length_2525_cov_809.885132, whole genome shotgun sequence (2597 bp)
Overview 1 RT 1: 306-2594 bp Neighborhood of RT #1 [306, 2594] RVT-Retrons CspC Feature: gene Location: 306-461 bp Feature: gene Location: 551-733 bp Feature: gene Location: 755-1894 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 899-1454 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 899-1454 bp Feature: gene Location: 1899-2102 bp Feature: domain Description: CspC Location: 1902-2097 bp Feature: domain Description: CspC Location: 1902-2097 bp Feature: gene Location: 2301-2594 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CspC (COG1278), RVT-Retrons

Seq: PQDJ01000051.1 Escherichia coli strain RDP19 NODE_53_length_5465_cov_125.423424, whole genome shotgun sequence (5537 bp)
Overview 1 RT 1: 93-2222 bp Neighborhood of RT #1 [93, 2222] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 93-1760 bp Feature: RT Description: RVT_N Location: 141-378 bp Feature: RT Description: RVT_N Location: 14 1-378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 429-1071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 29-1071 bp Feature: domain Description: GIIM Note: maturase Location: 1122-1356 bp Feature: domain Description: GIIM Note: maturase Location: 1122-1356 bp Feature: domain Description: HNHc Note: nucleases Location: 1566-1725 bp Feature: domain Description: HNHc Note: nucleases Location: 1566-1725 bp Feature: gene Location: 1797-1943 bp Feature: gene Location: 2040-2222 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)