myRT

myRT report for GCA_002917735.1_ASM291773v1

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Seq: NSMN01001154.1 Escherichia coli strain 211 E72_S47_L001_R1_001_(paired)_contig_1154, whole genome shotgun sequence (1049 bp)
Overview 1 RT 1: 354-1047 bp Neighborhood of RT #1 [354, 1046] RVT-Retrons Feature: gene Location: 354-1046 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 669-1047 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 669-1 047 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: NSMN01000314.1 Escherichia coli strain 211 E72_S47_L001_R1_001_(paired)_contig_314, whole genome shotgun sequence (3870 bp)
Overview 1 RT 1: 1-3603 bp Neighborhood of RT #1 [1, 3620] RhsA RVT-GII group_II_RT_mat Feature: gene Location: 1-1425 bp Feature: domain Description: RhsA Location: 4-991 bp Feature: domain Description: RhsA Location: 4-991 bp Feature: gene Location: 1790-2017 bp Feature: gene Location: 2268-3347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2739-3330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 739-3330 bp Feature: gene Location: 3369-3620 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3375-3603 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3375-3603 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RhsA (COG3209), RVT-GII, group_II_RT_mat (TIGR04416)

Seq: NSMN01000356.1 Escherichia coli strain 211 E72_S47_L001_R1_001_(paired)_contig_356, whole genome shotgun sequence (729 bp)
Overview 1 RT 1: 2-692 bp Neighborhood of RT #1 [2, 727] RVT-GII Feature: gene Location: 2-727 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-692 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: NSMN01000370.1 Escherichia coli strain 211 E72_S47_L001_R1_001_(paired)_contig_370, whole genome shotgun sequence (367 bp)
Overview 1 RT 1: 1-364 bp Neighborhood of RT #1 [1, 366] RVT-GII Feature: gene Location: 1-366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 220-364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 220-364 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: NSMN01000428.1 Escherichia coli strain 211 E72_S47_L001_R1_001_(paired)_contig_428, whole genome shotgun sequence (210 bp)
Overview 1 RT 1: 1-157 bp Neighborhood of RT #1 [1, 156] RVT-GII Feature: gene Location: 1-156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 97-157 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 97-15 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: NSMN01000547.1 Escherichia coli strain 211 E72_S47_L001_R1_001_(paired)_contig_547, whole genome shotgun sequence (1780 bp)
Overview 1 RT 1: 177-1561 bp Neighborhood of RT #1 [177, 1596] RVT-GII GIIM HNHc Feature: gene Location: 177-362 bp Feature: gene Location: 322-1596 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 325-907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 325-907 bp Feature: domain Description: GIIM Note: maturase Location: 958-1192 bp Feature: domain Description: GIIM Note: maturase Location: 958-1192 bp Feature: domain Description: HNHc Note: nucleases Location: 1402-1561 bp Feature: domain Description: HNHc Note: nucleases Location: 1402-156 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: NSMN01000093.1 Escherichia coli strain 211 E72_S47_L001_R1_001_(paired)_contig_93, whole genome shotgun sequence (16199 bp)
Overview 1 RT 1: 2595-6595 bp Neighborhood of RT #1 [2595, 6603] DcuC RVT-GII Asparaginase_2 Feature: gene Location: 2595-3956 bp Feature: domain Description: DcuC Location: 2598-3930 bp Feature: domain Description: DcuC Location: 2598-3930 bp Feature: gene Location: 4009-4380 bp Feature: gene Location: 4602-5048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4908-5010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4908-5010 bp Feature: gene Location: 5096-5245 bp Feature: gene Location: 5572-6603 bp Feature: domain Description: Asparaginase_2 Location: 5662-6595 bp Feature: domain Description: Asparaginase_2 Location: 5662-6595 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DcuC (TIGR00771), RVT-GII, Asparaginase_2 (pfam01112)