myRT

myRT report for GCA_002917795.1_ASM291779v1

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Seq: NXMF01000001.1 Shigella flexneri strain 06-3102 unitig_0, whole genome shotgun sequence (4731519 bp)
Overview 1 RT 1: 3262522-3269897 bp Neighborhood of RT #1 [3262522, 3269962] ESPR Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 3262522-3266640 bp Feature: domain Description: ESPR Location: 3262525-3262594 bp Feature: domain Description: ESPR Location: 3262525-3262594 bp Feature: domain Description: Peptidase_S6 Location: 3262675-3264847 bp Feature: domain Description: Peptidase_S6 Location: 3262675-3264847 bp Feature: domain Description: autotrans_barl Location: 3265411-3266638 bp Feature: domain Description: autotrans_barl Location: 326541 1 -3266638 bp Feature: gene Location: 3266805-3267191 bp Feature: domain Description: PHA02517 Location: 3266808-3267189 bp Feature: domain Description: PHA0251 7 Location: 3266808-32671 89 bp Feature: gene Location: 3267368-3268891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3267641-3268373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3267641 -3268373 bp Feature: domain Description: GIIM Note: maturase Location: 3268448-3268646 bp Feature: domain Description: GIIM Note: maturase Location: 3268448-3268646 bp Feature: gene Location: 3268845-3269270 bp Feature: gene Location: 3269483-3269962 bp Feature: domain Description: PHA02517 Location: 3269543-3269897 bp Feature: domain Description: PHA0251 7 Location: 3269543-3269897 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: NXMF01000004.1 Shigella flexneri strain 06-3102 unitig_1, whole genome shotgun sequence (211922 bp)
Overview 1 RT 1: 76945-80271 bp 2 RT 2: 174586-177664 bp Neighborhood of RT #1 [76945, 80285] PHA02517 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Neighborhood of RT #2 [174586, 177664] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 76945-77592 bp Feature: domain Description: PHA02517 Location: 76948-77590 bp Feature: domain Description: PHA02 517 Location: 76948-77590 bp Feature: gene Location: 77686-77817 bp Feature: domain Description: DDE_Tnp_IS66 Location: 77698-77791 bp Feature: domain Description: DDE_Tnp_IS66 Location: 77698-77791 bp Feature: gene Location: 78294-79511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78480-79134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78480-79134 bp Feature: domain Description: GIIM Note: maturase Location: 79212-79434 bp Feature: domain Description: GIIM Note: maturase Location: 792 12 -79434 bp Feature: gene Location: 79627-79773 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 79639-79750 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 79639-79750 bp Feature: gene Location: 79800-80285 bp Feature: domain Description: COG3547 Location: 79818-80271 bp Feature: domain Description: COG3547 Location: 79818-802 71 bp Feature: gene Location: 174586-175335 bp Feature: domain Description: PAP2_acid_phosphatase Location: 174661-175315 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 174661-175315 bp Feature: gene Location: 175731-175931 bp Feature: domain Description: Tra5 Location: 175740-175914 bp Feature: domain Description: Tra5 Location: 175740-175914 bp Feature: gene Location: 175944-176747 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 176244-176739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1762 44-176739 bp Feature: gene Location: 176800-177126 bp Feature: domain Description: GIIM Note: maturase Location: 176833-177052 bp Feature: domain Description: GIIM Note: maturase Location: 176833-177052 bp Feature: gene Location: 177479-177664 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), PAP2_acid_phosphatase (cd03397), Tra5 (COG2801)

Seq: NXMF01000007.1 Shigella flexneri strain 06-3102 unitig_2, whole genome shotgun sequence (86076 bp)
Overview 1 RT 1: 15467-18523 bp 2 RT 2: 25429-30389 bp Neighborhood of RT #1 [15467, 18523] DUF1380 RVT_N RVT-GII GIIM HNHc Neighborhood of RT #2 [25429, 30389] GIIM HNHc RVT_N RVT-GII RVT_N RVT-GII GIIM HNHc Feature: gene Location: 15467-15889 bp Feature: domain Description: DUF1380 Location: 15470-15767 bp Feature: domain Description: DUF13 80 Location: 15470-15767 bp Feature: gene Location: 15941-16279 bp Feature: gene Location: 16394-18061 bp Feature: RT Description: RVT_N Location: 16442-16679 bp Feature: RT Description: RVT_N Location: 16442-16679 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16730-17372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1673 0-173 72 bp Feature: domain Description: GIIM Note: maturase Location: 17423-17657 bp Feature: domain Description: GIIM Note: maturase Location: 17423 -17657 bp Feature: domain Description: HNHc Note: nucleases Location: 17867-18026 bp Feature: domain Description: HNHc Note: nucleases Location: 17867-18026 bp Feature: gene Location: 18098-18244 bp Feature: gene Location: 18341-18523 bp Feature: gene Location: 25429-25803 bp Feature: gene Location: 25918-26586 bp Feature: domain Description: GIIM Note: maturase Location: 25948-26182 bp Feature: domain Description: GIIM Note: maturase Location: 25948-26182 bp Feature: domain Description: HNHc Note: nucleases Location: 26392-26551 bp Feature: domain Description: HNHc Note: nucleases Location: 263 92-26551 bp Feature: gene Location: 26616-27584 bp Feature: RT Description: RVT_N Location: 26664-26901 bp Feature: RT Description: RVT_N Location: 26664-26901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26952-27582 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26952-27582 bp Feature: gene Location: 27621-27767 bp Feature: gene Location: 27864-28046 bp Feature: gene Location: 28260-29927 bp Feature: RT Description: RVT_N Location: 28308-28545 bp Feature: RT Description: RVT_N Location: 283 08-28545 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28596-29238 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28596-2923 8 bp Feature: domain Description: GIIM Note: maturase Location: 29289-29523 bp Feature: domain Description: GIIM Note: maturase Location: 29289-29523 bp Feature: domain Description: HNHc Note: nucleases Location: 29733-29892 bp Feature: domain Description: HNHc Note: nucleases Location: 2973 3 -29892 bp Feature: gene Location: 29964-30110 bp Feature: gene Location: 30207-30389 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)