myRT

myRT report for GCA_002918505.1_ASM291850v1

Download annotations/find similar RTs

Seq: PQLY01000013.1 Citrobacter freundii strain S1284 scaffold13.1, whole genome shotgun sequence (145742 bp)
Overview 1 RT 1: 3-4021 bp 2 RT 2: 30422-35143 bp Neighborhood of RT #1 [3, 4021] LmbE RVT-UG4 Neighborhood of RT #2 [30422, 35148] umuC RVT_N RVT-GII GIIM HNHc umuC Feature: gene Location: 3-365 bp Feature: domain Description: LmbE Location: 27-291 bp Feature: domain Description: LmbE Location: 27-291 bp Feature: gene Location: 566-1549 bp Feature: gene Location: 1567-2109 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1576-1915 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1 576-1 91 5 bp Feature: gene Location: 2273-3475 bp Feature: gene Location: 3506-4021 bp Feature: gene Location: 30422-31327 bp Feature: gene Location: 31480-32400 bp Feature: domain Description: umuC Location: 31597-32386 bp Feature: domain Description: umuC Location: 31 597-32386 bp Feature: gene Location: 32381-34042 bp Feature: domain Description: RVT_N Location: 32429-32672 bp Feature: domain Description: RVT_N Location: 32429-32672 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32717-33362 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3271 7-33362 bp Feature: domain Description: GIIM Note: maturase Location: 33413-33647 bp Feature: domain Description: GIIM Note: maturase Location: 3341 3-33647 bp Feature: domain Description: HNHc Note: nucleases Location: 33863-34019 bp Feature: domain Description: HNHc Note: nucleases Location: 33863-3401 9 bp Feature: gene Location: 34088-34510 bp Feature: gene Location: 34819-35148 bp Feature: domain Description: umuC Location: 34822-35143 bp Feature: domain Description: umuC Location: 34822-351 43 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LmbE (COG2120), RVT-UG4, umuC (PRK03609), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: PQLY01000020.1 Citrobacter freundii strain S1284 scaffold20.1, whole genome shotgun sequence (27427 bp)
Overview 1 RT 1: 992-3673 bp 2 RT 2: 23246-27425 bp Neighborhood of RT #1 [992, 3681] DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII RVT-GII GIIM traC_PFL_4706 COG4644 Neighborhood of RT #2 [23246, 27425] LmbE RVT-UG4 Feature: gene Location: 992-1246 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1010-1091 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1010-1091 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1112-1223 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1112 -12 2 3 bp Feature: gene Location: 1282-1533 bp Feature: gene Location: 1631-2632 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2027-2570 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 02 7-2 570 bp Feature: gene Location: 2586-3068 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2595-2694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 595-2 694 bp Feature: domain Description: GIIM Note: maturase Location: 2760-2970 bp Feature: domain Description: GIIM Note: maturase Location: 2 760-2 970 bp Feature: gene Location: 3088-3351 bp Feature: gene Location: 3376-3681 bp Feature: domain Description: traC_PFL_4706 Location: 3391-3514 bp Feature: domain Description: traC_PFL_4706 Location: 3391-3514 bp Feature: domain Description: COG4644 Location: 3517-3673 bp Feature: domain Description: COG4644 Location: 3517-3673 bp Feature: gene Location: 23246-23896 bp Feature: domain Description: LmbE Location: 23270-23855 bp Feature: domain Description: LmbE Location: 2 32 70-2 3855 bp Feature: gene Location: 24390-25295 bp Feature: gene Location: 25298-26293 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 25649-26087 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2 5649-2 6087 bp Feature: gene Location: 26300-26815 bp Feature: gene Location: 26844-27425 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), traC_PFL_4706 (TIGR03744), COG4644 (Transposase and inactivated derivatives, TnpA family ), LmbE (COG2120), RVT-UG4