myRT

myRT report for GCA_002918555.1_ASM291855v1

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Seq: PQMB01000005.1 Citrobacter amalonaticus strain S646 scaffold5.1, whole genome shotgun sequence (576562 bp)
Overview 1 RT 1: 408978-414701 bp Neighborhood of RT #1 [408978, 414701] DUF5375 Prim_Zn_Ribbon COG3378 RVT-Retrons TIR_2 Arm-DNA-bind_3 Feature: gene Location: 408978-409298 bp Feature: domain Description: DUF5375 Location: 408981-409296 bp Feature: domain Description: DUF5375 Location: 408981 -409296 bp Feature: gene Location: 409313-411646 bp Feature: domain Description: Prim_Zn_Ribbon Location: 409406-409511 bp Feature: domain Description: Prim_Zn_Ribbon Location: 409406-40951 1 bp Feature: domain Description: COG3378 Location: 410120-411638 bp Feature: domain Description: COG3378 Location: 41 01 20-41 1 638 bp Feature: gene Location: 412235-413866 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 412550-413147 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41 2550-41 31 47 bp Feature: domain Description: TIR_2 Location: 413471-413831 bp Feature: domain Description: TIR_2 Location: 41 3471 -41 3831 bp Feature: gene Location: 414273-414470 bp Feature: domain Description: Arm-DNA-bind_3 Location: 414333-414408 bp Feature: domain Description: Arm-DNA-bind_3 Location: 41 4333-41 4408 bp Feature: gene Location: 414492-414701 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5375 (pfam17345), Prim_Zn_Ribbon (smart00778), COG3378 (Phage- or plasmid-associated DNA primase ), RVT-Retrons, TIR_2 (pfam13676), Arm-DNA-bind_3 (pfam13356)

Seq: PQMB01000009.1 Citrobacter amalonaticus strain S646 scaffold9.1, whole genome shotgun sequence (169064 bp)
Overview 1 RT 1: 129141-135074 bp Neighborhood of RT #1 [129141, 135076] PRK10547 PRK10612 RVT-GII GIIM RAYT PRK06819 Feature: gene Location: 129141-131174 bp Feature: domain Description: PRK10547 Location: 129144-131148 bp Feature: domain Description: PRK10547 Location: 12 9144-131148 bp Feature: gene Location: 131179-131685 bp Feature: domain Description: PRK10612 Location: 131212-131674 bp Feature: domain Description: PRK10612 Location: 1312 12 -131674 bp Feature: gene Location: 132140-133507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132473-133085 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132 473-133085 bp Feature: domain Description: GIIM Note: maturase Location: 133142-133349 bp Feature: domain Description: GIIM Note: maturase Location: 133142 -133349 bp Feature: gene Location: 133760-134080 bp Feature: domain Description: RAYT Location: 133805-134021 bp Feature: domain Description: RAYT Location: 133805-13402 1 bp Feature: gene Location: 134405-135076 bp Feature: domain Description: PRK06819 Location: 134408-135074 bp Feature: domain Description: PRK06819 Location: 134408-135074 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10547 (chemotaxis protein CheA; Provisional), PRK10612 (chemotaxis protein CheW), RVT-GII, GIIM (pfam08388), RAYT (COG1943), PRK06819 (FliC/FljB family flagellin)