myRT

myRT report for GCA_002918615.1_ASM291861v1

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Seq: PQKK01000014.1 Klebsiella pneumoniae strain KPNIH43 NODE_14, whole genome shotgun sequence (151779 bp)
Overview 1 RT 1: 112886-119754 bp Neighborhood of RT #1 [112886, 119756] FimC FimD RVT-UG4 Integrase_1 INT_P4_C Feature: gene Location: 112886-113614 bp Feature: domain Description: FimC Location: 112934-113597 bp Feature: domain Description: FimC Location: 1 1 2934-1 1 3597 bp Feature: gene Location: 113646-116255 bp Feature: domain Description: FimD Location: 113703-116244 bp Feature: domain Description: FimD Location: 1 1 3703-1 1 6244 bp Feature: gene Location: 116255-118333 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 116663-117107 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1 1 6663-1 1 71 07 bp Feature: gene Location: 118390-118830 bp Feature: domain Description: Integrase_1 Location: 118396-118612 bp Feature: domain Description: Integrase_1 Location: 1 1 8396-1 1 861 2 bp Feature: gene Location: 119091-119756 bp Feature: domain Description: INT_P4_C Location: 119196-119754 bp Feature: domain Description: INT_P4_C Location: 1 1 91 96-1 1 9754 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), INT_P4_C (cd00801)

Seq: PQKK01000042.1 Klebsiella pneumoniae strain KPNIH43 NODE_42, whole genome shotgun sequence (14176 bp)
Overview 1 RT 1: 6115-9323 bp Neighborhood of RT #1 [6115, 9323] PRK10276 RVT-GII Feature: gene Location: 6115-6540 bp Feature: domain Description: PRK10276 Location: 6118-6526 bp Feature: domain Description: PRK102 76 Location: 6118-652 6 bp Feature: gene Location: 6658-6891 bp Feature: gene Location: 6942-8477 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7347-8085 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7347-8085 bp Feature: gene Location: 8711-8941 bp Feature: gene Location: 9000-9323 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII

Seq: PQKK01000043.1 Klebsiella pneumoniae strain KPNIH43 NODE_43, whole genome shotgun sequence (13239 bp)
Overview 1 RT 1: 9263-13196 bp Neighborhood of RT #1 [9263, 13196] umuC PRK10276 RVT-GII Feature: gene Location: 9263-10534 bp Feature: domain Description: umuC Location: 9266-10526 bp Feature: domain Description: umuC Location: 9266-10526 bp Feature: gene Location: 10534-11346 bp Feature: domain Description: PRK10276 Location: 10966-11329 bp Feature: domain Description: PRK10276 Location: 10966-113 29 bp Feature: gene Location: 11371-12858 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11776-12466 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11776-12466 bp Feature: gene Location: 12927-13196 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII

Seq: PQKK01000062.1 Klebsiella pneumoniae strain KPNIH43 NODE_62, whole genome shotgun sequence (3109 bp)
Overview 1 RT 1: 2-2629 bp Neighborhood of RT #1 [2, 2874] InsE PHA02517 RVT-GII GIIM Feature: gene Location: 2-304 bp Feature: domain Description: InsE Location: 11-296 bp Feature: domain Description: InsE Location: 11-296 bp Feature: gene Location: 334-759 bp Feature: domain Description: PHA02517 Location: 358-694 bp Feature: domain Description: PHA02517 Location: 358-694 bp Feature: gene Location: 1351-2874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1624-2356 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1624 -2356 bp Feature: domain Description: GIIM Note: maturase Location: 2431-2629 bp Feature: domain Description: GIIM Note: maturase Location: 24 31-2629 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)