myRT

myRT report for GCA_002926975.1_ASM292697v1

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Seq: PIIR01000026.1 Escherichia coli strain F_30_1_R8 30-1_R8_contig_57, whole genome shotgun sequence (66540 bp)
Overview 1 RT 1: 52874-56756 bp Neighborhood of RT #1 [52874, 56761] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 52874-53590 bp Feature: domain Description: rph Location: 52877-53585 bp Feature: domain Description: rph Location: 52877-53585 bp Feature: gene Location: 53641-54297 bp Feature: domain Description: pyrE Location: 53659-54292 bp Feature: domain Description: pyrE Location: 53659-54292 bp Feature: gene Location: 54595-55554 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 54730-55279 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 54730-55279 bp Feature: gene Location: 55600-56196 bp Feature: domain Description: slmA Location: 55606-56182 bp Feature: domain Description: slmA Location: 55606-561 82 bp Feature: gene Location: 56303-56761 bp Feature: domain Description: dut Location: 56309-56756 bp Feature: domain Description: dut Location: 56309-56756 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: PIIR01000038.1 Escherichia coli strain F_30_1_R8 30-1_R8_contig_70, whole genome shotgun sequence (34927 bp)
Overview 1 RT 1: 14607-19944 bp Neighborhood of RT #1 [14607, 19952] PFLE_PFLC RVT-GII RVT-GII GIIM YesM Feature: gene Location: 14607-15524 bp Feature: domain Description: PFLE_PFLC Location: 14643-15498 bp Feature: domain Description: PFLE_PFLC Location: 14643-15498 bp Feature: gene Location: 15661-16566 bp Feature: gene Location: 17052-17591 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17382-17460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17382 -17460 bp Feature: gene Location: 17619-18140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17625-17907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1762 5-17907 bp Feature: domain Description: GIIM Note: maturase Location: 17955-18135 bp Feature: domain Description: GIIM Note: maturase Location: 17955-18135 bp Feature: gene Location: 18462-18650 bp Feature: gene Location: 18690-19952 bp Feature: domain Description: YesM Location: 19203-19944 bp Feature: domain Description: YesM Location: 192 03-19944 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PFLE_PFLC (TIGR02494), RVT-GII, GIIM (pfam08388), YesM (COG2972)