myRT

myRT report for GCA_002927155.1_ASM292715v1

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Seq: JPFD01000001.1 Pseudomonas aeruginosa strain T6313 contig1, whole genome shotgun sequence (3388844 bp)
Overview 1 RT 1: 749484-759790 bp 2 RT 2: 776048-784886 bp 3 RT 3: 2615883-2621802 bp Neighborhood of RT #1 [749484, 759792] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [776048, 784915] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Neighborhood of RT #3 [2615883, 2621802] resist_ArsH KOG0389 SF2_C_SNF RVT_N RVT-GII GIIM HNHc DEXHc_Snf Feature: gene Location: 749484-750605 bp Feature: domain Description: COG3177 Location: 749502-750594 bp Feature: domain Description: COG31 77 Location: 749502-750594 bp Feature: gene Location: 750864-751001 bp Feature: gene Location: 751329-753014 bp Feature: RT Description: RVT_N Location: 751386-751626 bp Feature: RT Description: RVT_N Location: 751 386-751 626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 751674-752310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 751 674-75231 0 bp Feature: domain Description: GIIM Note: maturase Location: 752364-752595 bp Feature: domain Description: GIIM Note: maturase Location: 752364-752595 bp Feature: domain Description: HNH Note: nucleases Location: 752847-752985 bp Feature: domain Description: HNH Note: nucleases Location: 752847-752985 bp Feature: gene Location: 754095-757832 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 754203-754860 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 754203-754860 bp Feature: domain Description: PRK09776 Location: 755073-755544 bp Feature: domain Description: PRK09776 Location: 755073-755544 bp Feature: domain Description: PAS Location: 755601-756126 bp Feature: domain Description: PAS Location: 755601 -7561 26 bp Feature: domain Description: PRK10060 Location: 756135-757782 bp Feature: domain Description: PRK1 0060 Location: 7561 35-757782 bp Feature: gene Location: 757939-759792 bp Feature: domain Description: PRK05658 Location: 757951-759790 bp Feature: domain Description: PRK05658 Location: 757951 -759790 bp Feature: gene Location: 776048-777262 bp Feature: domain Description: PRK10770 Location: 776060-777254 bp Feature: domain Description: PRK1 0770 Location: 776060-777254 bp Feature: gene Location: 777321-780110 bp Feature: domain Description: LptD Location: 777516-780096 bp Feature: domain Description: LptD Location: 77751 6-780096 bp Feature: gene Location: 780243-781955 bp Feature: RT Description: RVT_N Location: 780300-780543 bp Feature: RT Description: RVT_N Location: 780300-780543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 780588-781224 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 780588-781 224 bp Feature: domain Description: YkfC Location: 781431-781584 bp Feature: domain Description: YkfC Location: 781 431 -781 584 bp Feature: domain Description: HNH Note: nucleases Location: 781761-781899 bp Feature: domain Description: HNH Note: nucleases Location: 781 761 -781 899 bp Feature: gene Location: 783228-784244 bp Feature: domain Description: COG3178 Location: 783231-784230 bp Feature: domain Description: COG31 78 Location: 783231 -784230 bp Feature: gene Location: 784241-784915 bp Feature: domain Description: NTP_transferase_like_1 Location: 784247-784886 bp Feature: domain Description: NTP_transferase_like_1 Location: 784247-784886 bp Feature: gene Location: 2615883-2616605 bp Feature: domain Description: resist_ArsH Location: 2615907-2616561 bp Feature: domain Description: resist_ArsH Location: 261 5907-261 6561 bp Feature: gene Location: 2616663-2617922 bp Feature: domain Description: KOG0389 Location: 2616693-2616816 bp Feature: domain Description: KOG0389 Location: 261 6693-261 681 6 bp Feature: domain Description: SF2_C_SNF Location: 2617362-2617758 bp Feature: domain Description: SF2_C_SNF Location: 261 7362-261 7758 bp Feature: gene Location: 2617990-2619708 bp Feature: RT Description: RVT_N Location: 2618047-2618284 bp Feature: RT Description: RVT_N Location: 261 8047-261 8284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2618335-2618986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 261 8335-261 8986 bp Feature: domain Description: GIIM Note: maturase Location: 2619040-2619271 bp Feature: domain Description: GIIM Note: maturase Location: 261 9040-261 9271 bp Feature: domain Description: HNHc Note: nucleases Location: 2619505-2619661 bp Feature: domain Description: HNHc Note: nucleases Location: 261 9505-261 9661 bp Feature: gene Location: 2620305-2621360 bp Feature: domain Description: DEXHc_Snf Location: 2620524-2620779 bp Feature: domain Description: DEXHc_Snf Location: 2620524-2620779 bp Feature: gene Location: 2621497-2621802 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422), resist_ArsH (TIGR02690), KOG0389 (KOG0389, SNF2 family DNA-dependent ATPase ), SF2_C_SNF (cd18793), HNHc (smart00507), DEXHc_Snf (cd17919)